Cluster: CGMR023366_CGC42
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR023366
- CGC Family ID: CGCFAM_00152
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_82377 | k141_82377_89 | 121393 | 123450 | + | 3.A.25.2.1 |
| pfam | k141_82377 | k141_82377_90 | 123499 | 124335 | + | CTP_transf_1 |
| pfam | k141_82377 | k141_82377_91 | 124355 | 125038 | + | PS_Dcarbxylase |
| TC | k141_82377 | k141_82377_92 | 125043 | 126149 | + | 2.A.86.1.8 |
| pfam | k141_82377 | k141_82377_93 | 126149 | 126514 | + | Flavokinase |
| pfam | k141_82377 | k141_82377_94 | 126519 | 127928 | + | AdoHcyase_NAD | 2-Hacid_dh_C | AdoHcyase | KARI_N |
| CAZyme | k141_82377 | k141_82377_95 | 128062 | 129480 | - | GH125 |
| TF | k141_82377 | k141_82377_96 | 129580 | 130758 | - | HTH_AraC | HTH_AraC |
| CAZyme | k141_82377 | k141_82377_97 | 130968 | 133850 | + | GH92 |
| pfam | k141_82377 | k141_82377_98 | 133858 | 134697 | + | Exo_endo_phos |
| pfam | k141_82377 | k141_82377_99 | 134710 | 136641 | + | Alk_phosphatase |
| CAZyme | k141_82377 | k141_82377_100 | 136648 | 138261 | + | GH63 |
| pfam | k141_82377 | k141_82377_101 | 138277 | 139293 | + | Metallophos |
| sulfatase | k141_82377 | k141_82377_102 | 139290 | 140111 | + | S1_7 |
| CAZyme | k141_82377 | k141_82377_103 | 140117 | 141751 | + | GH20 |
| TC | k141_82377 | k141_82377_104 | 142006 | 145194 | + | 1.B.14.6.1 |
| TC | k141_82377 | k141_82377_105 | 145207 | 146841 | + | 8.A.46.1.3 |
Gene ID: k141_82377_89
Type: TC
Location: 121393 - 123450 (+)
Type: TC
Location: 121393 - 123450 (+)
Gene ID: k141_82377_90
Type: pfam
Location: 123499 - 124335 (+)
Type: pfam
Location: 123499 - 124335 (+)
Gene ID: k141_82377_91
Type: pfam
Location: 124355 - 125038 (+)
Type: pfam
Location: 124355 - 125038 (+)
Gene ID: k141_82377_92
Type: TC
Location: 125043 - 126149 (+)
Type: TC
Location: 125043 - 126149 (+)
Gene ID: k141_82377_93
Type: pfam
Location: 126149 - 126514 (+)
Type: pfam
Location: 126149 - 126514 (+)
Gene ID: k141_82377_94
Type: pfam
Location: 126519 - 127928 (+)
Type: pfam
Location: 126519 - 127928 (+)
Gene ID: k141_82377_95
Type: CAZyme
Location: 128062 - 129480 (-)
Type: CAZyme
Location: 128062 - 129480 (-)
Gene ID: k141_82377_96
Type: TF
Location: 129580 - 130758 (-)
Type: TF
Location: 129580 - 130758 (-)
Gene ID: k141_82377_97
Type: CAZyme
Location: 130968 - 133850 (+)
Type: CAZyme
Location: 130968 - 133850 (+)
Gene ID: k141_82377_98
Type: pfam
Location: 133858 - 134697 (+)
Type: pfam
Location: 133858 - 134697 (+)
Gene ID: k141_82377_99
Type: pfam
Location: 134710 - 136641 (+)
Type: pfam
Location: 134710 - 136641 (+)
Gene ID: k141_82377_100
Type: CAZyme
Location: 136648 - 138261 (+)
Type: CAZyme
Location: 136648 - 138261 (+)
Gene ID: k141_82377_101
Type: pfam
Location: 138277 - 139293 (+)
Type: pfam
Location: 138277 - 139293 (+)
Gene ID: k141_82377_102
Type: sulfatase
Location: 139290 - 140111 (+)
Type: sulfatase
Location: 139290 - 140111 (+)
Gene ID: k141_82377_103
Type: CAZyme
Location: 140117 - 141751 (+)
Type: CAZyme
Location: 140117 - 141751 (+)
Gene ID: k141_82377_104
Type: TC
Location: 142006 - 145194 (+)
Type: TC
Location: 142006 - 145194 (+)
Gene ID: k141_82377_105
Type: TC
Location: 145207 - 146841 (+)
Type: TC
Location: 145207 - 146841 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.