Genome Details
Selected Rep_genome_ID: CGMR017525
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter vanvlietii
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR017525 | 3,077,047 | 95.22% | 0.58% | China | Asia | CGMR |
| SPMP01_bin.23 | 3,179,581 | 91.67% | 0.58% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| CGMR017525_CGC28 | CGCFAM_00005 | Yes | 4 | 3 | |
| CGMR017525_CGC18 | CGCFAM_00006 | Yes | 12 | 5 | |
| CGMR017525_CGC30 | CGCFAM_00012 | Yes | 4 | 1 | host glycan/beta-glucan |
| CGMR017525_CGC3 | CGCFAM_00090 | Yes | 5 | 2 | |
| CGMR017525_CGC6 | CGCFAM_00099 | Yes | 3 | 2 | |
| CGMR017525_CGC22 | CGCFAM_00160 | Yes | 5 | 2 | alpha-glucan |
| CGMR017525_CGC8 | CGCFAM_00206 | Yes | 6 | 3 | |
| CGMR017525_CGC24 | CGCFAM_01314 | Yes | 8 | 3 | |
| CGMR017525_CGC21 | CGCFAM_01670 | Yes | 6 | 1 | |
| CGMR017525_CGC7 | CGCFAM_01910 | Yes | 6 | 1 | |
| CGMR017525_CGC12 | CGCFAM_03221 | Yes | 5 | 1 | |
| CGMR017525_CGC23 | CGCFAM_04189 | Yes | 4 | 2 | |
| CGMR017525_CGC17 | CGCFAM_05304 | Yes | 3 | 2 | |
| CGMR017525_CGC16 | CGCFAM_05420 | Yes | 6 | 1 | |
| CGMR017525_CGC37 | CGCFAM_07559 | Yes | 10 | 4 | |
| CGMR017525_CGC35 | CGCFAM_08095 | Yes | 9 | 3 | |
| CGMR017525_CGC32 | CGCFAM_08304 | Yes | 11 | 1 |
Top CAZyme Families