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Genome Details

Selected Rep_genome_ID: A6.CMAG_3
Total Genomes Found: 9
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Actinomycetota
→
Class
Actinomycetes
→
Order
Actinomycetales
→
Family
Bifidobacteriaceae
→
Genus
Bifidobacterium
→
Species
Bifidobacterium pseudocatenulatum
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
A6.CMAG_3 2,294,106 100% 0.23% China(Inner Mongolia) Asia IMGG
CGMR064383 2,053,988 98.18% 0% China Asia CGMR
Rep_838 2,319,407 98.6364% 0.227273% NA NA WIS
SPMP103_bin.33 2,215,115 98.94% 0.23% Singapore Asia SPMP
SPMP107_bin.63 2,156,929 98.91% 0.68% Singapore Asia SPMP
SPMP30_bin.118 2,234,418 96.56% 1.95% Singapore Asia SPMP
SPMP49_bin.59 2,139,326 98.45% 0.88% Singapore Asia SPMP
SPMP99_bin.70 2,343,365 97.58% 2.95% Singapore Asia SPMP
SW048_78 2,197,141 100% 0.23% NA Africa H3AfricaPhase2
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
A6.CMAG_3_CGC20 CGCFAM_00013 Yes 4 1
A6.CMAG_3_CGC24 CGCFAM_00035 Yes 6 1 fructan
A6.CMAG_3_CGC27 CGCFAM_00040 Yes 12 8
A6.CMAG_3_CGC30 CGCFAM_00055 Yes 6 4
A6.CMAG_3_CGC21 CGCFAM_00214 Yes 4 1 alpha-glucan
A6.CMAG_3_CGC36 CGCFAM_00583 Yes 8 2 alpha-glucan/galactan
A6.CMAG_3_CGC17 CGCFAM_00767 Yes 4 1
A6.CMAG_3_CGC5 CGCFAM_00936 Yes 10 6 arabinogalactan/xylan
A6.CMAG_3_CGC14 CGCFAM_00991 Yes 5 1
A6.CMAG_3_CGC23 CGCFAM_01130 Yes 18 6
A6.CMAG_3_CGC2 CGCFAM_01325 Yes 4 2
A6.CMAG_3_CGC10 CGCFAM_01492 Yes 7 3 xylan
A6.CMAG_3_CGC32 CGCFAM_01935 Yes 12 3
A6.CMAG_3_CGC8 CGCFAM_01936 Yes 7 2
A6.CMAG_3_CGC37 CGCFAM_02359 Yes 3 1
A6.CMAG_3_CGC18 CGCFAM_02433 Yes 7 1
A6.CMAG_3_CGC25 CGCFAM_02434 Yes 7 2
A6.CMAG_3_CGC3 CGCFAM_02435 Yes 7 2
A6.CMAG_3_CGC13 CGCFAM_03141 Yes 5 1
A6.CMAG_3_CGC19 CGCFAM_04461 Yes 7 1
A6.CMAG_3_CGC29 CGCFAM_04462 Yes 6 1
A6.CMAG_3_CGC6 CGCFAM_04466 Yes 6 1
A6.CMAG_3_CGC7 CGCFAM_04467 Yes 13 5
A6.CMAG_3_CGC4 CGCFAM_06388 Yes 5 3 arabinogalactan
A6.CMAG_3_CGC12 CGCFAM_06799 Yes 3 1
Top CAZyme Families