Cluster: A6.CMAG_3_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A6.CMAG_3
- CGC Family ID: CGCFAM_01936
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A6_contig_1141 | A6_contig_1141_371 | 494244 | 496406 | + | GH77 |
| pfam | A6_contig_1141 | A6_contig_1141_372 | 496737 | 497186 | + | Ribosomal_L13 |
| pfam | A6_contig_1141 | A6_contig_1141_373 | 497207 | 497698 | + | Ribosomal_S9 |
| CAZyme | A6_contig_1141 | A6_contig_1141_374 | 497787 | 500234 | - | GH13_11 |
| STP | A6_contig_1141 | A6_contig_1141_375 | 500549 | 500950 | + | Glyoxalase |
| pfam | A6_contig_1141 | A6_contig_1141_376 | 501120 | 502250 | - | ROK |
| TC | A6_contig_1141 | A6_contig_1141_377 | 502468 | 503736 | + | 2.A.1.18.2 |
Gene ID: A6_contig_1141_371
Type: CAZyme
Location: 494244 - 496406 (+)
Type: CAZyme
Location: 494244 - 496406 (+)
Gene ID: A6_contig_1141_372
Type: pfam
Location: 496737 - 497186 (+)
Type: pfam
Location: 496737 - 497186 (+)
Gene ID: A6_contig_1141_373
Type: pfam
Location: 497207 - 497698 (+)
Type: pfam
Location: 497207 - 497698 (+)
Gene ID: A6_contig_1141_374
Type: CAZyme
Location: 497787 - 500234 (-)
Type: CAZyme
Location: 497787 - 500234 (-)
Gene ID: A6_contig_1141_375
Type: STP
Location: 500549 - 500950 (+)
Type: STP
Location: 500549 - 500950 (+)
Gene ID: A6_contig_1141_376
Type: pfam
Location: 501120 - 502250 (-)
Type: pfam
Location: 501120 - 502250 (-)
Gene ID: A6_contig_1141_377
Type: TC
Location: 502468 - 503736 (+)
Type: TC
Location: 502468 - 503736 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.