Cluster: A6.CMAG_3_CGC27
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: A6.CMAG_3
- CGC Family ID: CGCFAM_00040
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A6_contig_1141 | A6_contig_1141_1632 | 1973335 | 1974393 | - | GT2 |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1633 | 1974393 | 1975688 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A6_contig_1141 | A6_contig_1141_1634 | 1975724 | 1976521 | - | GT111 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1635 | 1976952 | 1978052 | + | GT4 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1636 | 1978133 | 1979200 | + | GT4 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1637 | 1979194 | 1980216 | + | GT2 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1638 | 1980233 | 1981171 | + | GT32 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1639 | 1981168 | 1982172 | + | GT2 |
| pfam | A6_contig_1141 | A6_contig_1141_1640 | 1982169 | 1982633 | + | Hexapep |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1641 | 1982644 | 1983879 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A6_contig_1141 | A6_contig_1141_1642 | 1983857 | 1984741 | + | GT14 |
| TC | A6_contig_1141 | A6_contig_1141_1643 | 1984791 | 1986254 | + | 2.A.66.2.16 |
Gene ID: A6_contig_1141_1632
Type: CAZyme
Location: 1973335 - 1974393 (-)
Type: CAZyme
Location: 1973335 - 1974393 (-)
Gene ID: A6_contig_1141_1633
Type:
Location: 1974393 - 1975688 (-)
Type:
Location: 1974393 - 1975688 (-)
Gene ID: A6_contig_1141_1634
Type: CAZyme
Location: 1975724 - 1976521 (-)
Type: CAZyme
Location: 1975724 - 1976521 (-)
Gene ID: A6_contig_1141_1635
Type: CAZyme
Location: 1976952 - 1978052 (+)
Type: CAZyme
Location: 1976952 - 1978052 (+)
Gene ID: A6_contig_1141_1636
Type: CAZyme
Location: 1978133 - 1979200 (+)
Type: CAZyme
Location: 1978133 - 1979200 (+)
Gene ID: A6_contig_1141_1637
Type: CAZyme
Location: 1979194 - 1980216 (+)
Type: CAZyme
Location: 1979194 - 1980216 (+)
Gene ID: A6_contig_1141_1638
Type: CAZyme
Location: 1980233 - 1981171 (+)
Type: CAZyme
Location: 1980233 - 1981171 (+)
Gene ID: A6_contig_1141_1639
Type: CAZyme
Location: 1981168 - 1982172 (+)
Type: CAZyme
Location: 1981168 - 1982172 (+)
Gene ID: A6_contig_1141_1640
Type: pfam
Location: 1982169 - 1982633 (+)
Type: pfam
Location: 1982169 - 1982633 (+)
Gene ID: A6_contig_1141_1641
Type:
Location: 1982644 - 1983879 (+)
Type:
Location: 1982644 - 1983879 (+)
Gene ID: A6_contig_1141_1642
Type: CAZyme
Location: 1983857 - 1984741 (+)
Type: CAZyme
Location: 1983857 - 1984741 (+)
Gene ID: A6_contig_1141_1643
Type: TC
Location: 1984791 - 1986254 (+)
Type: TC
Location: 1984791 - 1986254 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A6_contig_1141_1635 | vegan > omnivore | 5.52932 | 0.00138 |
| A6_contig_1141_1635 | vegetarian > omnivore | 3.13818 | 0.00565 |