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Cluster: A6.CMAG_3_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A6_contig_1141 A6_contig_1141_113 158586 160100 + GH13_18
NULL(UNKNOWN) A6_contig_1141 A6_contig_1141_114 160289 160417 + NULL(UNKNOWN)
[View Structural Homologs]
TC A6_contig_1141 A6_contig_1141_115 160811 162367 + 2.A.1.2.93
TC A6_contig_1141 A6_contig_1141_116 162820 164169 + 2.A.1.6.10
pfam A6_contig_1141 A6_contig_1141_117 164477 165529 + KARI_C | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N
pfam A6_contig_1141 A6_contig_1141_118 165886 166926 + KARI_C | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N
CAZyme A6_contig_1141 A6_contig_1141_119 167068 168885 + CE20
Gene ID: A6_contig_1141_113
Type: CAZyme
Location: 158586 - 160100 (+)
Gene ID: A6_contig_1141_114
Type:
Location: 160289 - 160417 (+)
Gene ID: A6_contig_1141_115
Type: TC
Location: 160811 - 162367 (+)
Gene ID: A6_contig_1141_116
Type: TC
Location: 162820 - 164169 (+)
Gene ID: A6_contig_1141_117
Type: pfam
Location: 164477 - 165529 (+)
Gene ID: A6_contig_1141_118
Type: pfam
Location: 165886 - 166926 (+)
Gene ID: A6_contig_1141_119
Type: CAZyme
Location: 167068 - 168885 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A6_contig_1141_114 vegan > omnivore 1.71645 0.00138
A6_contig_1141_114 vegetarian > omnivore 1.84936 0.00565

🧭 Explore Read Mapping of CGC

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