Cluster: A6.CMAG_3_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: xylan
- Genome ID: A6.CMAG_3
- CGC Family ID: CGCFAM_01492
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A6_contig_1141 | A6_contig_1141_503 | 640168 | 641862 | + | GH43_12 |
| TF | A6_contig_1141 | A6_contig_1141_504 | 641995 | 643014 | - | LacI |
| TC | A6_contig_1141 | A6_contig_1141_505 | 643374 | 644648 | + | 3.A.1.1.21 |
| TC | A6_contig_1141 | A6_contig_1141_506 | 644749 | 645792 | + | 3.A.1.1.7 |
| TC | A6_contig_1141 | A6_contig_1141_507 | 645792 | 646685 | + | 3.A.1.1.18 |
| CAZyme | A6_contig_1141 | A6_contig_1141_508 | 646762 | 648393 | + | CBM91 | GH43_11 |
| CAZyme | A6_contig_1141 | A6_contig_1141_509 | 648480 | 650444 | + | CE20 | CE20 |
Gene ID: A6_contig_1141_503
Type: CAZyme
Location: 640168 - 641862 (+)
Type: CAZyme
Location: 640168 - 641862 (+)
Gene ID: A6_contig_1141_504
Type: TF
Location: 641995 - 643014 (-)
Type: TF
Location: 641995 - 643014 (-)
Gene ID: A6_contig_1141_505
Type: TC
Location: 643374 - 644648 (+)
Type: TC
Location: 643374 - 644648 (+)
Gene ID: A6_contig_1141_506
Type: TC
Location: 644749 - 645792 (+)
Type: TC
Location: 644749 - 645792 (+)
Gene ID: A6_contig_1141_507
Type: TC
Location: 645792 - 646685 (+)
Type: TC
Location: 645792 - 646685 (+)
Gene ID: A6_contig_1141_508
Type: CAZyme
Location: 646762 - 648393 (+)
Type: CAZyme
Location: 646762 - 648393 (+)
Gene ID: A6_contig_1141_509
Type: CAZyme
Location: 648480 - 650444 (+)
Type: CAZyme
Location: 648480 - 650444 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.