Cluster: A6.CMAG_3_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate: arabinogalactan/xylan
- Genome ID: A6.CMAG_3
- CGC Family ID: CGCFAM_00936
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A6_contig_1141 | A6_contig_1141_203 | 278046 | 279704 | - | GH43_4 |
| CAZyme | A6_contig_1141 | A6_contig_1141_204 | 279701 | 281287 | - | GH43_4 |
| CAZyme | A6_contig_1141 | A6_contig_1141_205 | 281389 | 283506 | + | GH43_27 |
| TF | A6_contig_1141 | A6_contig_1141_206 | 283590 | 284666 | + | LacI |
| CAZyme | A6_contig_1141 | A6_contig_1141_207 | 284935 | 285951 | + | GH43_26 |
| STP | A6_contig_1141 | A6_contig_1141_208 | 286205 | 287521 | + | SBP_bac_1 |
| TC | A6_contig_1141 | A6_contig_1141_209 | 287672 | 288619 | + | 3.A.1.1.36 |
| TC | A6_contig_1141 | A6_contig_1141_210 | 288616 | 289524 | + | 3.A.1.1.36 |
| CAZyme | A6_contig_1141 | A6_contig_1141_211 | 289737 | 292298 | + | GH146 |
| CAZyme | A6_contig_1141 | A6_contig_1141_212 | 292525 | 294807 | - | GT51 |
Gene ID: A6_contig_1141_203
Type: CAZyme
Location: 278046 - 279704 (-)
Type: CAZyme
Location: 278046 - 279704 (-)
Gene ID: A6_contig_1141_204
Type: CAZyme
Location: 279701 - 281287 (-)
Type: CAZyme
Location: 279701 - 281287 (-)
Gene ID: A6_contig_1141_205
Type: CAZyme
Location: 281389 - 283506 (+)
Type: CAZyme
Location: 281389 - 283506 (+)
Gene ID: A6_contig_1141_206
Type: TF
Location: 283590 - 284666 (+)
Type: TF
Location: 283590 - 284666 (+)
Gene ID: A6_contig_1141_207
Type: CAZyme
Location: 284935 - 285951 (+)
Type: CAZyme
Location: 284935 - 285951 (+)
Gene ID: A6_contig_1141_208
Type: STP
Location: 286205 - 287521 (+)
Type: STP
Location: 286205 - 287521 (+)
Gene ID: A6_contig_1141_209
Type: TC
Location: 287672 - 288619 (+)
Type: TC
Location: 287672 - 288619 (+)
Gene ID: A6_contig_1141_210
Type: TC
Location: 288616 - 289524 (+)
Type: TC
Location: 288616 - 289524 (+)
Gene ID: A6_contig_1141_211
Type: CAZyme
Location: 289737 - 292298 (+)
Type: CAZyme
Location: 289737 - 292298 (+)
Gene ID: A6_contig_1141_212
Type: CAZyme
Location: 292525 - 294807 (-)
Type: CAZyme
Location: 292525 - 294807 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A6_contig_1141_203 | vegan > omnivore | 3.35711 | 0.00138 |
| A6_contig_1141_203 | vegetarian > omnivore | 3.15014 | 0.00565 |
| A6_contig_1141_208 | vegan > omnivore | 1.23859 | 0.00138 |
| A6_contig_1141_209 | vegan > omnivore | 1.43817 | 0.00138 |
| A6_contig_1141_211 | vegan > omnivore | 6.18903 | 0.00138 |
| A6_contig_1141_211 | vegetarian > omnivore | 6.35093 | 0.00565 |