Cluster: A6.CMAG_3_CGC32
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: A6.CMAG_3
- CGC Family ID: CGCFAM_01935
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A6_contig_1141 | A6_contig_1141_1765 | 2148775 | 2149959 | + | 3.A.1.122.13 |
| STP | A6_contig_1141 | A6_contig_1141_1766 | 2150078 | 2150869 | - | HD |
| peptidase | A6_contig_1141 | A6_contig_1141_1767 | 2150994 | 2151878 | - | C44.UPW |
| TC | A6_contig_1141 | A6_contig_1141_1768 | 2152080 | 2154257 | - | 2.A.72.1.3 |
| pfam | A6_contig_1141 | A6_contig_1141_1769 | 2154490 | 2155446 | - | TatD_DNase |
| CAZyme | A6_contig_1141 | A6_contig_1141_1770 | 2155568 | 2157928 | - | GH51_2 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1771 | 2158022 | 2159443 | - | GH27 |
| TF | A6_contig_1141 | A6_contig_1141_1772 | 2159687 | 2160919 | + | LacI |
| CAZyme | A6_contig_1141 | A6_contig_1141_1773 | 2161005 | 2163443 | - | GH36 |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1774 | 2163607 | 2164329 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A6_contig_1141 | A6_contig_1141_1775 | 2164525 | 2166312 | - | 3.A.1.106.3 |
| TC | A6_contig_1141 | A6_contig_1141_1776 | 2166343 | 2168205 | - | 3.A.1.106.3 |
Gene ID: A6_contig_1141_1765
Type: TC
Location: 2148775 - 2149959 (+)
Type: TC
Location: 2148775 - 2149959 (+)
Gene ID: A6_contig_1141_1766
Type: STP
Location: 2150078 - 2150869 (-)
Type: STP
Location: 2150078 - 2150869 (-)
Gene ID: A6_contig_1141_1767
Type: peptidase
Location: 2150994 - 2151878 (-)
Type: peptidase
Location: 2150994 - 2151878 (-)
Gene ID: A6_contig_1141_1768
Type: TC
Location: 2152080 - 2154257 (-)
Type: TC
Location: 2152080 - 2154257 (-)
Gene ID: A6_contig_1141_1769
Type: pfam
Location: 2154490 - 2155446 (-)
Type: pfam
Location: 2154490 - 2155446 (-)
Gene ID: A6_contig_1141_1770
Type: CAZyme
Location: 2155568 - 2157928 (-)
Type: CAZyme
Location: 2155568 - 2157928 (-)
Gene ID: A6_contig_1141_1771
Type: CAZyme
Location: 2158022 - 2159443 (-)
Type: CAZyme
Location: 2158022 - 2159443 (-)
Gene ID: A6_contig_1141_1772
Type: TF
Location: 2159687 - 2160919 (+)
Type: TF
Location: 2159687 - 2160919 (+)
Gene ID: A6_contig_1141_1773
Type: CAZyme
Location: 2161005 - 2163443 (-)
Type: CAZyme
Location: 2161005 - 2163443 (-)
Gene ID: A6_contig_1141_1774
Type:
Location: 2163607 - 2164329 (-)
Type:
Location: 2163607 - 2164329 (-)
Gene ID: A6_contig_1141_1775
Type: TC
Location: 2164525 - 2166312 (-)
Type: TC
Location: 2164525 - 2166312 (-)
Gene ID: A6_contig_1141_1776
Type: TC
Location: 2166343 - 2168205 (-)
Type: TC
Location: 2166343 - 2168205 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A6_contig_1141_1772 | vegan > omnivore | 1.11365 | 0.00138 |
| A6_contig_1141_1774 | vegan > omnivore | 1.93759 | 0.00138 |