Cluster: A6.CMAG_3_CGC23
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: A6.CMAG_3
- CGC Family ID: CGCFAM_01130
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A6_contig_1141 | A6_contig_1141_1511 | 1798278 | 1799777 | - | 2.A.1.3.30 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1512 | 1800022 | 1802385 | - | GH3 |
| STP | A6_contig_1141 | A6_contig_1141_1513 | 1802534 | 1803169 | - | TetR_N |
| CAZyme | A6_contig_1141 | A6_contig_1141_1514 | 1803217 | 1804416 | - | GH5_44 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1515 | 1804639 | 1806285 | - | CBM91 | GH43_11 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1516 | 1806348 | 1807556 | - | GH5_44 |
| pfam | A6_contig_1141 | A6_contig_1141_1517 | 1807992 | 1809230 | + | MFS_1 |
| TC | A6_contig_1141 | A6_contig_1141_1518 | 1809243 | 1810814 | + | 2.A.1.42.2 |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1519 | 1810838 | 1811785 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1520 | 1811787 | 1812974 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A6_contig_1141 | A6_contig_1141_1521 | 1813002 | 1814324 | + | 2.A.1.1.92 |
| pfam | A6_contig_1141 | A6_contig_1141_1522 | 1814336 | 1815049 | + | ACPS | 4PPT_N |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1523 | 1815138 | 1815242 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A6_contig_1141 | A6_contig_1141_1524 | 1815720 | 1817066 | - | GH30_2 |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1525 | 1817109 | 1817285 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A6_contig_1141 | A6_contig_1141_1526 | 1817204 | 1818529 | - | 2.A.1.2.93 |
| STP | A6_contig_1141 | A6_contig_1141_1527 | 1818909 | 1819535 | + | TetR_N |
| CAZyme | A6_contig_1141 | A6_contig_1141_1528 | 1819572 | 1821698 | - | GH42 |
Gene ID: A6_contig_1141_1511
Type: TC
Location: 1798278 - 1799777 (-)
Type: TC
Location: 1798278 - 1799777 (-)
Gene ID: A6_contig_1141_1512
Type: CAZyme
Location: 1800022 - 1802385 (-)
Type: CAZyme
Location: 1800022 - 1802385 (-)
Gene ID: A6_contig_1141_1513
Type: STP
Location: 1802534 - 1803169 (-)
Type: STP
Location: 1802534 - 1803169 (-)
Gene ID: A6_contig_1141_1514
Type: CAZyme
Location: 1803217 - 1804416 (-)
Type: CAZyme
Location: 1803217 - 1804416 (-)
Gene ID: A6_contig_1141_1515
Type: CAZyme
Location: 1804639 - 1806285 (-)
Type: CAZyme
Location: 1804639 - 1806285 (-)
Gene ID: A6_contig_1141_1516
Type: CAZyme
Location: 1806348 - 1807556 (-)
Type: CAZyme
Location: 1806348 - 1807556 (-)
Gene ID: A6_contig_1141_1517
Type: pfam
Location: 1807992 - 1809230 (+)
Type: pfam
Location: 1807992 - 1809230 (+)
Gene ID: A6_contig_1141_1518
Type: TC
Location: 1809243 - 1810814 (+)
Type: TC
Location: 1809243 - 1810814 (+)
Gene ID: A6_contig_1141_1519
Type:
Location: 1810838 - 1811785 (+)
Type:
Location: 1810838 - 1811785 (+)
Gene ID: A6_contig_1141_1520
Type:
Location: 1811787 - 1812974 (+)
Type:
Location: 1811787 - 1812974 (+)
Gene ID: A6_contig_1141_1521
Type: TC
Location: 1813002 - 1814324 (+)
Type: TC
Location: 1813002 - 1814324 (+)
Gene ID: A6_contig_1141_1522
Type: pfam
Location: 1814336 - 1815049 (+)
Type: pfam
Location: 1814336 - 1815049 (+)
Gene ID: A6_contig_1141_1523
Type:
Location: 1815138 - 1815242 (-)
Type:
Location: 1815138 - 1815242 (-)
Gene ID: A6_contig_1141_1524
Type: CAZyme
Location: 1815720 - 1817066 (-)
Type: CAZyme
Location: 1815720 - 1817066 (-)
Gene ID: A6_contig_1141_1525
Type:
Location: 1817109 - 1817285 (+)
Type:
Location: 1817109 - 1817285 (+)
Gene ID: A6_contig_1141_1526
Type: TC
Location: 1817204 - 1818529 (-)
Type: TC
Location: 1817204 - 1818529 (-)
Gene ID: A6_contig_1141_1527
Type: STP
Location: 1818909 - 1819535 (+)
Type: STP
Location: 1818909 - 1819535 (+)
Gene ID: A6_contig_1141_1528
Type: CAZyme
Location: 1819572 - 1821698 (-)
Type: CAZyme
Location: 1819572 - 1821698 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.