Cluster: A6.CMAG_3_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A6.CMAG_3
- CGC Family ID: CGCFAM_02434
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A6_contig_1141 | A6_contig_1141_1601 | 1939383 | 1940381 | + | GH23 |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1602 | 1940559 | 1941059 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1603 | 1941544 | 1941726 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A6_contig_1141 | A6_contig_1141_1604 | 1941807 | 1943462 | - | 9.B.18.1.2 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1605 | 1943591 | 1946290 | - | GH31_15 |
| TC | A6_contig_1141 | A6_contig_1141_1606 | 1946303 | 1947124 | - | 3.A.1.1.36 |
| TC | A6_contig_1141 | A6_contig_1141_1607 | 1947121 | 1948008 | - | 3.A.1.1.20 |
Gene ID: A6_contig_1141_1601
Type: CAZyme
Location: 1939383 - 1940381 (+)
Type: CAZyme
Location: 1939383 - 1940381 (+)
Gene ID: A6_contig_1141_1602
Type:
Location: 1940559 - 1941059 (-)
Type:
Location: 1940559 - 1941059 (-)
Gene ID: A6_contig_1141_1603
Type:
Location: 1941544 - 1941726 (+)
Type:
Location: 1941544 - 1941726 (+)
Gene ID: A6_contig_1141_1604
Type: TC
Location: 1941807 - 1943462 (-)
Type: TC
Location: 1941807 - 1943462 (-)
Gene ID: A6_contig_1141_1605
Type: CAZyme
Location: 1943591 - 1946290 (-)
Type: CAZyme
Location: 1943591 - 1946290 (-)
Gene ID: A6_contig_1141_1606
Type: TC
Location: 1946303 - 1947124 (-)
Type: TC
Location: 1946303 - 1947124 (-)
Gene ID: A6_contig_1141_1607
Type: TC
Location: 1947121 - 1948008 (-)
Type: TC
Location: 1947121 - 1948008 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A6_contig_1141_1606 | vegan > omnivore | 4.77150 | 0.00138 |
| A6_contig_1141_1606 | vegetarian > omnivore | 2.94532 | 0.00565 |
| A6_contig_1141_1607 | vegan > omnivore | 15.82157 | 0.00138 |
| A6_contig_1141_1607 | vegetarian > omnivore | 13.91511 | 0.00565 |