y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00015776m |
Family | GH3 |
Protein Properties | Length: 562 Molecular Weight: 60645.3 Isoelectric Point: 6.4546 |
Chromosome | Chromosome/Scaffold: 066515 Start: 800 End: 3879 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 35 | 269 | 0 |
LSTRLGIPMLYGIDAVHGHGNVYRATIFPHNVGLGCTRDPELAKKIGAAVALEVRATGIPYVFAPCVAVCRDPRWGRCYESFSEHPEVVQNMTSIISGFQ GEIPAGGRQGAPFVAGQRNVAACSKHYVGDGGTTKGINENNTVATFHELLSIHMPPYYNAVIRGVSTVMISYSSWNGVKMHANHFLITDFLKKELRFRGF VISDWQGLDRITTPDHADYLLSIKLGILAGIDMIM |
Full Sequence |
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Protein Sequence Length: 562 Download |
MHSGSVLSGG GSVPAKNAPP EEWAKMVNGM QSGALSTRLG IPMLYGIDAV HGHGNVYRAT 60 IFPHNVGLGC TRDPELAKKI GAAVALEVRA TGIPYVFAPC VAVCRDPRWG RCYESFSEHP 120 EVVQNMTSII SGFQGEIPAG GRQGAPFVAG QRNVAACSKH YVGDGGTTKG INENNTVATF 180 HELLSIHMPP YYNAVIRGVS TVMISYSSWN GVKMHANHFL ITDFLKKELR FRGFVISDWQ 240 GLDRITTPDH ADYLLSIKLG ILAGIDMIMI PYTYTEFIDD LTLLVQNGTI PMSRIDDAVR 300 RILRVKFTMG LFENPYADPS LAGELGKQEH RDLAREAVRK SLVLVKNGKP GDKPLLPLPK 360 KAHGSVLVAG SHADDLGSQC GGWTITWQGL TGNNLTAGTT ILDGIKRAVD PGTDVVYSEN 420 PDAGFIQQNK ARFDYAIVVV GEPPYAEQFG DNLNLTIPEP GPAIIQNVCG SGIRCVVVLV 480 SGRPLVVEPY IDAMDALVAA WLPGTEGQGV ADVLFGDYGF TGKLSRTWFR SVEQLPMNVG 540 DAHYDPLFPF GFGLETQPSS Y* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 6.0e-31 | 38 | 561 | 598 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 9.0e-39 | 342 | 554 | 228 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 3.0e-70 | 30 | 554 | 597 | + beta-D-glucoside glucohydrolase; Provisional | ||
COG1472 | BglX | 8.0e-73 | 37 | 386 | 358 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 3.0e-85 | 20 | 305 | 290 | + Glycosyl hydrolase family 3 N terminal domain. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF07705.2 | 0 | 4 | 560 | 63 | 620 | Os02g0131400 [Oryza sativa Japonica Group] |
RefSeq | NP_001045791.1 | 0 | 4 | 560 | 91 | 648 | Os02g0131400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001051275.1 | 0 | 4 | 560 | 73 | 624 | Os03g0749300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451476.1 | 0 | 4 | 561 | 103 | 662 | hypothetical protein SORBIDRAFT_04g002570 [Sorghum bicolor] |
RefSeq | XP_002453253.1 | 0 | 4 | 561 | 96 | 658 | hypothetical protein SORBIDRAFT_04g002560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1j8v_A | 0 | 4 | 560 | 51 | 603 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
PDB | 1iex_A | 0 | 4 | 560 | 51 | 603 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
PDB | 1iew_A | 0 | 4 | 560 | 51 | 603 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
PDB | 1iev_A | 0 | 4 | 560 | 51 | 603 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
PDB | 1ieq_A | 0 | 4 | 560 | 51 | 603 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO784016 | 417 | 14 | 430 | 0 |
FN998758 | 315 | 14 | 328 | 0 |
FN998735 | 304 | 14 | 317 | 0 |
FN998511 | 304 | 14 | 317 | 0 |
FN998446 | 309 | 14 | 322 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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