y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10016864m |
Family | GH3 |
Protein Properties | Length: 610 Molecular Weight: 66378.5 Isoelectric Point: 5.307 |
Chromosome | Chromosome/Scaffold: 5 Start: 7425095 End: 7429853 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 88 | 323 | 0 |
LASRLGIPIIYGTDAVHGNNNVYGATVFPHNIGLGATRDADLVRRIGAATALEVRASGVHWAFSPCVAVLRDPRWGRCYESYGEDPGLVSEMTSLVSGLQ GVPPEEHPNGYPFVAGRNNVVACAKHFVGDGGTDKGINEGNTIASYEDLERIHITPYLKCLSQGVSTVMASYSSWNGTQLHADRFLLTEILKDKLGFKGF LVSDWEGLDRLSKPQGSNYRNCIKTSVNAGIDMVMV |
Full Sequence |
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Protein Sequence Length: 610 Download |
MVVKDESSCV YKNRDAPVEA RVKDLLSRMT LPEKIGQMTQ IERNVASPVA ITDSFIGSVL 60 NAGGSAPFED AKSSDWADMI DGFQRSALAS RLGIPIIYGT DAVHGNNNVY GATVFPHNIG 120 LGATRDADLV RRIGAATALE VRASGVHWAF SPCVAVLRDP RWGRCYESYG EDPGLVSEMT 180 SLVSGLQGVP PEEHPNGYPF VAGRNNVVAC AKHFVGDGGT DKGINEGNTI ASYEDLERIH 240 ITPYLKCLSQ GVSTVMASYS SWNGTQLHAD RFLLTEILKD KLGFKGFLVS DWEGLDRLSK 300 PQGSNYRNCI KTSVNAGIDM VMVPLKYDQF IQDMTDLVES GEIPMDRVND AVERILRVKF 360 VAGLFEHPLT DRSLLRTVGC KEHRELAQEA VRKSLVLLKN GKNADKPFLP LDRKAKRILV 420 TGTHADDLGY QCGGWTKTWF GLSGRITIGT TLLDAIKAVV GDKTEVIYEK NPSKETLASS 480 EGFSYAIVAV GEPPYAEATG DNSELTIPFN GSDIVTAVAE KIPTLVVLIS GRPVVLEQRV 540 LEKTDALVAA WLPGTEGQGM ADVIFGDYDF EGKLPVSWFK RVEHLPLDAN ANSYDPLFPF 600 GFSLNSKPL* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 5.0e-47 | 13 | 579 | 617 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-52 | 395 | 605 | 228 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 2.0e-85 | 19 | 604 | 661 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 8.0e-87 | 30 | 358 | 333 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 1.0e-91 | 29 | 460 | 445 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY25449.1 | 0 | 29 | 606 | 1 | 578 | At3g47010 [Arabidopsis thaliana] |
RefSeq | NP_190284.1 | 0 | 2 | 609 | 1 | 608 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | NP_190285.3 | 0 | 1 | 606 | 1 | 606 | hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_190288.1 | 0 | 8 | 605 | 7 | 629 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | NP_190289.1 | 0 | 2 | 605 | 1 | 602 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x39_A | 0 | 10 | 606 | 4 | 599 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 1x38_A | 0 | 10 | 606 | 4 | 599 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 1lq2_A | 0 | 10 | 606 | 4 | 599 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1j8v_A | 0 | 10 | 606 | 4 | 599 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1iex_A | 0 | 10 | 606 | 4 | 599 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY265467 | 328 | 137 | 464 | 0 |
EX132989 | 299 | 57 | 355 | 0 |
HO784016 | 426 | 57 | 481 | 0 |
ES905148 | 278 | 2 | 279 | 0 |
HO784016 | 48 | 11 | 58 | 0.000002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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