y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G260700.2 |
Family | GH3 |
Protein Properties | Length: 607 Molecular Weight: 66608.9 Isoelectric Point: 4.8617 |
Chromosome | Chromosome/Scaffold: 13 Start: 57529088 End: 57533470 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 82 | 317 | 0 |
LESRLGIPLIYGIDAVHGNNSVYGATIFPHNVGLGATRDADLAQRIGAATALEVRATGIHYDFAPCVAVCRDPRWGRCFECYSEDTNIVRKMTSIITGLQ GKPPADYPKGYPFVAGRNNVIACAKHFVGDGGTEKGINEGNTILSYDDLESIHMAPYLDCISQGVSTIMASYSSWNGRQLHADHFLLTEILKDKLGFKGF VISDWEALDRLTEPRGSNYCYCISTAVNAGVDMVMV |
Full Sequence |
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Protein Sequence Length: 607 Download |
MDCTYKNPNA PIEDRVKDLL SRMTLQEKIG QMTQIERSVA TPADLKSFSI GSILSAGGSV 60 PFQKALPADW ADMVDKFQQA ALESRLGIPL IYGIDAVHGN NSVYGATIFP HNVGLGATRD 120 ADLAQRIGAA TALEVRATGI HYDFAPCVAV CRDPRWGRCF ECYSEDTNIV RKMTSIITGL 180 QGKPPADYPK GYPFVAGRNN VIACAKHFVG DGGTEKGINE GNTILSYDDL ESIHMAPYLD 240 CISQGVSTIM ASYSSWNGRQ LHADHFLLTE ILKDKLGFKG FVISDWEALD RLTEPRGSNY 300 CYCISTAVNA GVDMVMVPLR YKQFMDDLTF LVESGEVLMS RIDDAVERIL RVKFVAGLFE 360 YPFSDRSLLD IVGCKLHREL AREAVRKSLV LLKNGKNPEN PFLPLDRTAK RILVAGSHAD 420 NLGYQCGGWT STWFGGSGRI TIGTTILDAI RESAGDETEV IYDEYPSTNT LAGQYSFAIV 480 VVGEPPYAET LGDNKELVIP FNGSDIISSV ADKIPTLAIL ISGRPLVLEP QVLEKVDAFI 540 AAWLPGTEGR GVTDVVFGDF EFEGRLPMTW FRSNDQLPMN PGQNSYDPLF PLGFGLTYNK 600 EKKPQE* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 3.0e-39 | 7 | 600 | 645 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-44 | 389 | 598 | 229 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 2.0e-83 | 7 | 598 | 665 | + beta-D-glucoside glucohydrolase; Provisional | ||
COG1472 | BglX | 6.0e-87 | 23 | 421 | 406 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 9.0e-89 | 24 | 352 | 333 | + Glycosyl hydrolase family 3 N terminal domain. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN81230.1 | 0 | 1 | 601 | 1 | 635 | hypothetical protein [Vitis vinifera] |
EMBL | CBI16000.1 | 0 | 23 | 601 | 1 | 582 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002279757.1 | 0 | 1 | 601 | 113 | 716 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313393.1 | 0 | 3 | 597 | 6 | 595 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525596.1 | 0 | 3 | 601 | 4 | 603 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1j8v_A | 0 | 5 | 603 | 5 | 604 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1iex_A | 0 | 5 | 603 | 5 | 604 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1iew_A | 0 | 5 | 603 | 5 | 604 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1iev_A | 0 | 5 | 603 | 5 | 604 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1ieq_A | 0 | 5 | 603 | 5 | 604 | A Chain A, Arabidopsis Thaliana Peroxidase N |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY265467 | 348 | 131 | 475 | 0 |
FC882555 | 290 | 131 | 420 | 0 |
EL455042 | 314 | 58 | 371 | 0 |
HO784016 | 422 | 51 | 471 | 0 |
HO784016 | 48 | 5 | 52 | 0.00000002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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