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Genome Details

Selected Rep_genome_ID: Rep_842
Total Genomes Found: 46
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Actinomycetota
→
Class
Actinomycetes
→
Order
Actinomycetales
→
Family
Bifidobacteriaceae
→
Genus
Bifidobacterium
→
Species
Bifidobacterium adolescentis
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
A91.CMAG_1 2,232,379 100% 0% China(Inner Mongolia) Asia IMGG
CGMR018108 2,094,394 100% 0% China Asia CGMR
GCA_021620745.1_ASM2162074v1_genomic 2,412,203 96.37% 2.8% NA Africa H3AfricaPhase1
GCA_021626005.1_ASM2162600v1_genomic 1,897,461 93.25% 1.19% NA Africa H3AfricaPhase1
GCA_021630945.1_ASM2163094v1_genomic 2,366,737 100% 0.98% NA Africa H3AfricaPhase1
Rep_842 2,236,897 100% 0% NA NA WIS
SPMP04_bin.5 2,151,522 98.48% 0% Singapore Asia SPMP
SPMP08_bin.1 1,933,571 93.19% 0.36% Singapore Asia SPMP
SPMP09_bin.39 2,084,202 96.21% 0.45% Singapore Asia SPMP
SPMP10_bin.7 2,096,040 99.84% 0.91% Singapore Asia SPMP
SPMP100_bin.3 2,194,721 96.2% 0.55% Singapore Asia SPMP
SPMP101_bin.4 1,950,488 93.24% 0.45% Singapore Asia SPMP
SPMP103_bin.39 2,103,603 97.75% 0.61% Singapore Asia SPMP
SPMP104_bin.14 2,017,784 95.65% 4.45% Singapore Asia SPMP
SPMP105_bin.4 2,218,601 98.58% 2.88% Singapore Asia SPMP
SPMP109_bin.3 2,127,873 100% 0% Singapore Asia SPMP
SPMP12_bin.76 2,217,473 97.98% 0% Singapore Asia SPMP
SPMP13_bin.123 2,141,355 98.62% 0.68% Singapore Asia SPMP
SPMP14_bin.3 2,055,696 95.77% 3.86% Singapore Asia SPMP
SPMP16_bin.66 2,006,827 97.58% 0.91% Singapore Asia SPMP
SPMP18_bin.82 2,029,610 99.27% 0.23% Singapore Asia SPMP
SPMP25_bin.30 2,087,711 98.23% 1.16% Singapore Asia SPMP
SPMP28_bin.16 2,003,795 94.03% 2.39% Singapore Asia SPMP
SPMP30_bin.13 1,992,687 94.61% 0% Singapore Asia SPMP
SPMP31_bin.4 2,167,820 97.97% 0% Singapore Asia SPMP
SPMP34_bin.57 2,049,399 97.1% 0.98% Singapore Asia SPMP
SPMP36_bin.75 2,186,441 100% 3.18% Singapore Asia SPMP
SPMP38_bin.113 1,981,043 95.78% 0.45% Singapore Asia SPMP
SPMP40_bin.98 2,225,515 98.86% 0.09% Singapore Asia SPMP
SPMP52_bin.61 2,098,786 97.01% 0.3% Singapore Asia SPMP
SPMP59_bin.2 2,302,461 95.58% 0.38% Singapore Asia SPMP
SPMP60_bin.88 2,177,119 96.75% 1.36% Singapore Asia SPMP
SPMP64_bin.7 2,260,489 99.72% 0.08% Singapore Asia SPMP
SPMP66_bin.86 1,940,855 94.05% 1.7% Singapore Asia SPMP
SPMP67_bin.52 2,143,266 99% 0.45% Singapore Asia SPMP
SPMP70_bin.3 2,238,302 96.44% 0.91% Singapore Asia SPMP
SPMP71_bin.57 2,147,220 97.58% 0% Singapore Asia SPMP
SPMP74_bin.113 1,952,068 94.34% 0.83% Singapore Asia SPMP
SPMP75_bin.2 1,949,165 94.79% 0.45% Singapore Asia SPMP
SPMP81_bin.22 1,945,947 96.15% 4.38% Singapore Asia SPMP
SPMP83_bin.3 2,020,529 98% 0% Singapore Asia SPMP
SPMP86_bin.6 2,423,038 96.66% 3.18% Singapore Asia SPMP
SPMP93_bin.71 2,176,936 97.14% 5% Singapore Asia SPMP
SPMP94_bin.37 2,176,355 100% 0% Singapore Asia SPMP
SPMP99_bin.102 2,251,581 98.36% 0% Singapore Asia SPMP
SW125_37 2,194,161 100% 0% NA Africa H3AfricaPhase2
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_842_CGC28 CGCFAM_00232 Yes 3 1
Rep_842_CGC8 CGCFAM_00825 Yes 12 4 alpha-glucan
Rep_842_CGC2 CGCFAM_00936 Yes 9 4 arabinogalactan/xylan
Rep_842_CGC11 CGCFAM_01300 Yes 4 1
Rep_842_CGC7 CGCFAM_01326 Yes 14 4
Rep_842_CGC12 CGCFAM_02069 Yes 5 1
Rep_842_CGC21 CGCFAM_02433 Yes 7 1
Rep_842_CGC4 CGCFAM_02435 Yes 7 2
PUL0214_Rep_842_C1 CGCFAM_04146 Yes 9 2 galactan
Rep_842_CGC27 CGCFAM_04904 Yes 10 1
Rep_842_CGC10 CGCFAM_06803 Yes 15 5
Rep_842_CGC3 CGCFAM_10954 Yes 18 1
Top CAZyme Families