Cluster: Rep_842_CGC10
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_842
- CGC Family ID: CGCFAM_06803
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_842_c_0 | Rep_842_c_0_467 | 605071 | 607218 | + | GH2 |
| TC | Rep_842_c_0 | Rep_842_c_0_468 | 607898 | 609394 | + | 2.A.1.1.42 |
| peptidase | Rep_842_c_0 | Rep_842_c_0_469 | 609468 | 610556 | - | S09.UPW |
| TC | Rep_842_c_0 | Rep_842_c_0_470 | 610962 | 612854 | + | 3.A.1.106.3 |
| TC | Rep_842_c_0 | Rep_842_c_0_471 | 612869 | 614656 | + | 3.A.1.106.3 |
| CAZyme | Rep_842_c_0 | Rep_842_c_0_472 | 614891 | 617056 | + | GH127 |
| CAZyme | Rep_842_c_0 | Rep_842_c_0_473 | 617368 | 619719 | + | GH36 |
| CAZyme | Rep_842_c_0 | Rep_842_c_0_474 | 619750 | 620787 | - | GH43_22 |
| TF | Rep_842_c_0 | Rep_842_c_0_475 | 620911 | 621981 | - | LacI |
| CAZyme | Rep_842_c_0 | Rep_842_c_0_476 | 622198 | 624609 | + | GH51_2 |
| pfam | Rep_842_c_0 | Rep_842_c_0_477 | 624702 | 625658 | + | TatD_DNase |
| TC | Rep_842_c_0 | Rep_842_c_0_478 | 625903 | 628083 | + | 2.A.72.1.3 |
| peptidase | Rep_842_c_0 | Rep_842_c_0_479 | 628458 | 629327 | + | C44.UPW |
| STP | Rep_842_c_0 | Rep_842_c_0_480 | 629569 | 630399 | + | HD |
| TC | Rep_842_c_0 | Rep_842_c_0_481 | 630932 | 631984 | - | 3.A.1.114.1 |
Gene ID: Rep_842_c_0_467
Type: CAZyme
Location: 605071 - 607218 (+)
Type: CAZyme
Location: 605071 - 607218 (+)
Gene ID: Rep_842_c_0_468
Type: TC
Location: 607898 - 609394 (+)
Type: TC
Location: 607898 - 609394 (+)
Gene ID: Rep_842_c_0_469
Type: peptidase
Location: 609468 - 610556 (-)
Type: peptidase
Location: 609468 - 610556 (-)
Gene ID: Rep_842_c_0_470
Type: TC
Location: 610962 - 612854 (+)
Type: TC
Location: 610962 - 612854 (+)
Gene ID: Rep_842_c_0_471
Type: TC
Location: 612869 - 614656 (+)
Type: TC
Location: 612869 - 614656 (+)
Gene ID: Rep_842_c_0_472
Type: CAZyme
Location: 614891 - 617056 (+)
Type: CAZyme
Location: 614891 - 617056 (+)
Gene ID: Rep_842_c_0_473
Type: CAZyme
Location: 617368 - 619719 (+)
Type: CAZyme
Location: 617368 - 619719 (+)
Gene ID: Rep_842_c_0_474
Type: CAZyme
Location: 619750 - 620787 (-)
Type: CAZyme
Location: 619750 - 620787 (-)
Gene ID: Rep_842_c_0_475
Type: TF
Location: 620911 - 621981 (-)
Type: TF
Location: 620911 - 621981 (-)
Gene ID: Rep_842_c_0_476
Type: CAZyme
Location: 622198 - 624609 (+)
Type: CAZyme
Location: 622198 - 624609 (+)
Gene ID: Rep_842_c_0_477
Type: pfam
Location: 624702 - 625658 (+)
Type: pfam
Location: 624702 - 625658 (+)
Gene ID: Rep_842_c_0_478
Type: TC
Location: 625903 - 628083 (+)
Type: TC
Location: 625903 - 628083 (+)
Gene ID: Rep_842_c_0_479
Type: peptidase
Location: 628458 - 629327 (+)
Type: peptidase
Location: 628458 - 629327 (+)
Gene ID: Rep_842_c_0_480
Type: STP
Location: 629569 - 630399 (+)
Type: STP
Location: 629569 - 630399 (+)
Gene ID: Rep_842_c_0_481
Type: TC
Location: 630932 - 631984 (-)
Type: TC
Location: 630932 - 631984 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium adolescentis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.