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Cluster: Rep_842_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_842_c_0 Rep_842_c_0_240 279434 280465 + GT2
peptidase Rep_842_c_0 Rep_842_c_0_241 280650 282272 - C69.001
pfam Rep_842_c_0 Rep_842_c_0_242 282970 283206 + Glutaredoxin
TC Rep_842_c_0 Rep_842_c_0_243 283422 284726 - 3.A.1.121.4
TC Rep_842_c_0 Rep_842_c_0_244 285187 288024 + 9.B.74.1.1
TC Rep_842_c_0 Rep_842_c_0_245 288021 290216 + 9.B.74.1.1
STP Rep_842_c_0 Rep_842_c_0_246 290216 290893 + TetR_N
pfam Rep_842_c_0 Rep_842_c_0_247 290958 291512 - FMN_bind
TC Rep_842_c_0 Rep_842_c_0_248 291509 292399 - 3.A.1.122.8
TC Rep_842_c_0 Rep_842_c_0_249 292402 293718 - 3.A.1.122.8
TC Rep_842_c_0 Rep_842_c_0_250 293749 295248 - 3.A.1.122.8
pfam Rep_842_c_0 Rep_842_c_0_251 295274 296545 - FtrD-like
TC Rep_842_c_0 Rep_842_c_0_252 296809 297468 - 2.A.108.2.10
TC Rep_842_c_0 Rep_842_c_0_253 297530 298564 - 2.A.108.2.11
pfam Rep_842_c_0 Rep_842_c_0_254 299743 300795 + ApbE | ApbE
TC Rep_842_c_0 Rep_842_c_0_255 300880 301860 - 8.A.5.1.7
TC Rep_842_c_0 Rep_842_c_0_256 302031 303872 - 3.A.1.135.6
TC Rep_842_c_0 Rep_842_c_0_257 303884 305635 - 3.A.1.135.6
Gene ID: Rep_842_c_0_240
Type: CAZyme
Location: 279434 - 280465 (+)
Gene ID: Rep_842_c_0_241
Type: peptidase
Location: 280650 - 282272 (-)
Gene ID: Rep_842_c_0_242
Type: pfam
Location: 282970 - 283206 (+)
Gene ID: Rep_842_c_0_243
Type: TC
Location: 283422 - 284726 (-)
Gene ID: Rep_842_c_0_244
Type: TC
Location: 285187 - 288024 (+)
Gene ID: Rep_842_c_0_245
Type: TC
Location: 288021 - 290216 (+)
Gene ID: Rep_842_c_0_246
Type: STP
Location: 290216 - 290893 (+)
Gene ID: Rep_842_c_0_247
Type: pfam
Location: 290958 - 291512 (-)
Gene ID: Rep_842_c_0_248
Type: TC
Location: 291509 - 292399 (-)
Gene ID: Rep_842_c_0_249
Type: TC
Location: 292402 - 293718 (-)
Gene ID: Rep_842_c_0_250
Type: TC
Location: 293749 - 295248 (-)
Gene ID: Rep_842_c_0_251
Type: pfam
Location: 295274 - 296545 (-)
Gene ID: Rep_842_c_0_252
Type: TC
Location: 296809 - 297468 (-)
Gene ID: Rep_842_c_0_253
Type: TC
Location: 297530 - 298564 (-)
Gene ID: Rep_842_c_0_254
Type: pfam
Location: 299743 - 300795 (+)
Gene ID: Rep_842_c_0_255
Type: TC
Location: 300880 - 301860 (-)
Gene ID: Rep_842_c_0_256
Type: TC
Location: 302031 - 303872 (-)
Gene ID: Rep_842_c_0_257
Type: TC
Location: 303884 - 305635 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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