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Cluster: Rep_842_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_842_c_0 Rep_842_c_0_421 540887 542185 + 3.A.1.1.45
TF Rep_842_c_0 Rep_842_c_0_422 542359 543372 - LacI
TC Rep_842_c_0 Rep_842_c_0_423 543736 544590 + 3.A.1.1.45
TC Rep_842_c_0 Rep_842_c_0_424 544587 545429 + 3.A.1.1.45
TC Rep_842_c_0 Rep_842_c_0_425 545629 546231 - 9.B.28.1.3
CAZyme Rep_842_c_0 Rep_842_c_0_426 546443 548194 + GH13_30
CAZyme Rep_842_c_0 Rep_842_c_0_427 548311 550479 - GH77
CAZyme Rep_842_c_0 Rep_842_c_0_428 550766 552397 - GH13_44
STP Rep_842_c_0 Rep_842_c_0_429 552636 553880 + SBP_bac_1
TC Rep_842_c_0 Rep_842_c_0_430 554122 555525 + 3.A.1.1.27
TC Rep_842_c_0 Rep_842_c_0_431 555522 556421 + 3.A.1.1.27
CAZyme Rep_842_c_0 Rep_842_c_0_432 556437 558491 + GH13_14
Gene ID: Rep_842_c_0_421
Type: TC
Location: 540887 - 542185 (+)
Gene ID: Rep_842_c_0_422
Type: TF
Location: 542359 - 543372 (-)
Gene ID: Rep_842_c_0_423
Type: TC
Location: 543736 - 544590 (+)
Gene ID: Rep_842_c_0_424
Type: TC
Location: 544587 - 545429 (+)
Gene ID: Rep_842_c_0_425
Type: TC
Location: 545629 - 546231 (-)
Gene ID: Rep_842_c_0_426
Type: CAZyme
Location: 546443 - 548194 (+)
Gene ID: Rep_842_c_0_427
Type: CAZyme
Location: 548311 - 550479 (-)
Gene ID: Rep_842_c_0_428
Type: CAZyme
Location: 550766 - 552397 (-)
Gene ID: Rep_842_c_0_429
Type: STP
Location: 552636 - 553880 (+)
Gene ID: Rep_842_c_0_430
Type: TC
Location: 554122 - 555525 (+)
Gene ID: Rep_842_c_0_431
Type: TC
Location: 555522 - 556421 (+)
Gene ID: Rep_842_c_0_432
Type: CAZyme
Location: 556437 - 558491 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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