Genome Details
Selected Rep_genome_ID: Rep_634
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900760675
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| Rep_634 | 3,090,424 | 99.9733% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_634_CGC1 | CGCFAM_00001 | Yes | 10 | 3 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_634_CGC18 | CGCFAM_00016 | Yes | 9 | 3 | host glycan |
| Rep_634_CGC20 | CGCFAM_00016 | Yes | 6 | 2 | host glycan |
| Rep_634_CGC23 | CGCFAM_00016 | Yes | 11 | 5 | host glycan |
| Rep_634_CGC15 | CGCFAM_00075 | Yes | 3 | 1 | |
| Rep_634_CGC13 | CGCFAM_00113 | Yes | 4 | 1 | |
| Rep_634_CGC28 | CGCFAM_00128 | Yes | 9 | 4 | |
| Rep_634_CGC26 | CGCFAM_00331 | Yes | 11 | 4 | alginate |
| Rep_634_CGC31 | CGCFAM_00536 | Yes | 7 | 2 | |
| Rep_634_CGC27 | CGCFAM_00543 | Yes | 4 | 1 | |
| Rep_634_CGC7 | CGCFAM_00564 | Yes | 7 | 2 | |
| Rep_634_CGC24 | CGCFAM_00632 | Yes | 6 | 1 | |
| Rep_634_CGC5 | CGCFAM_00715 | Yes | 6 | 1 | |
| Rep_634_CGC17 | CGCFAM_01059 | Yes | 3 | 1 | |
| Rep_634_CGC14 | CGCFAM_01378 | Yes | 4 | 2 | |
| Rep_634_CGC6 | CGCFAM_01434 | Yes | 5 | 2 | |
| Rep_634_CGC32 | CGCFAM_01681 | Yes | 8 | 1 | |
| Rep_634_CGC9 | CGCFAM_05956 | Yes | 18 | 6 | |
| Rep_634_CGC30 | CGCFAM_11301 | Yes | 4 | 1 |
Top CAZyme Families