Cluster: Rep_634_CGC9
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_634
- CGC Family ID: CGCFAM_05956
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_634_c_3 | Rep_634_c_3_25 | 29981 | 31921 | - | GH97 |
| CAZyme | Rep_634_c_3 | Rep_634_c_3_26 | 32011 | 33576 | - | GH125 |
| CAZyme | Rep_634_c_3 | Rep_634_c_3_27 | 33646 | 36489 | - | GH106 |
| CAZyme | Rep_634_c_3 | Rep_634_c_3_28 | 36521 | 37702 | - | GH76 |
| sulfatase | Rep_634_c_3 | Rep_634_c_3_29 | 37709 | 38497 | - | S1_7 |
| TF | Rep_634_c_3 | Rep_634_c_3_30 | 38712 | 42767 | + | HTH_AraC |
| CAZyme | Rep_634_c_3 | Rep_634_c_3_31 | 42876 | 45323 | - | CBM66 | GH51_4 |
| TF | Rep_634_c_3 | Rep_634_c_3_32 | 45516 | 46493 | + | GntR |
| CAZyme | Rep_634_c_3 | Rep_634_c_3_33 | 46607 | 47929 | - | GH76 |
| pfam | Rep_634_c_3 | Rep_634_c_3_34 | 47983 | 50166 | - | SusE | SusE |
| pfam | Rep_634_c_3 | Rep_634_c_3_35 | 50257 | 51402 | - | SusE |
| TC | Rep_634_c_3 | Rep_634_c_3_36 | 51418 | 53019 | - | 8.A.46.1.3 |
| TC | Rep_634_c_3 | Rep_634_c_3_37 | 53034 | 56159 | - | 1.B.14.6.1 |
| pfam | Rep_634_c_3 | Rep_634_c_3_38 | 56685 | 57140 | - | ATP-synt_C | ATP-synt_C |
| TC | Rep_634_c_3 | Rep_634_c_3_39 | 57163 | 59010 | - | 3.A.2.3.3 |
| pfam | Rep_634_c_3 | Rep_634_c_3_40 | 59007 | 59615 | - | ATP-synt_D |
| TC | Rep_634_c_3 | Rep_634_c_3_41 | 59622 | 60944 | - | 3.A.2.3.3 |
| TC | Rep_634_c_3 | Rep_634_c_3_42 | 60955 | 62709 | - | 3.A.2.3.3 |
Gene ID: Rep_634_c_3_25
Type: CAZyme
Location: 29981 - 31921 (-)
Type: CAZyme
Location: 29981 - 31921 (-)
Gene ID: Rep_634_c_3_26
Type: CAZyme
Location: 32011 - 33576 (-)
Type: CAZyme
Location: 32011 - 33576 (-)
Gene ID: Rep_634_c_3_27
Type: CAZyme
Location: 33646 - 36489 (-)
Type: CAZyme
Location: 33646 - 36489 (-)
Gene ID: Rep_634_c_3_28
Type: CAZyme
Location: 36521 - 37702 (-)
Type: CAZyme
Location: 36521 - 37702 (-)
Gene ID: Rep_634_c_3_29
Type: sulfatase
Location: 37709 - 38497 (-)
Type: sulfatase
Location: 37709 - 38497 (-)
Gene ID: Rep_634_c_3_30
Type: TF
Location: 38712 - 42767 (+)
Type: TF
Location: 38712 - 42767 (+)
Gene ID: Rep_634_c_3_31
Type: CAZyme
Location: 42876 - 45323 (-)
Type: CAZyme
Location: 42876 - 45323 (-)
Gene ID: Rep_634_c_3_32
Type: TF
Location: 45516 - 46493 (+)
Type: TF
Location: 45516 - 46493 (+)
Gene ID: Rep_634_c_3_33
Type: CAZyme
Location: 46607 - 47929 (-)
Type: CAZyme
Location: 46607 - 47929 (-)
Gene ID: Rep_634_c_3_34
Type: pfam
Location: 47983 - 50166 (-)
Type: pfam
Location: 47983 - 50166 (-)
Gene ID: Rep_634_c_3_35
Type: pfam
Location: 50257 - 51402 (-)
Type: pfam
Location: 50257 - 51402 (-)
Gene ID: Rep_634_c_3_36
Type: TC
Location: 51418 - 53019 (-)
Type: TC
Location: 51418 - 53019 (-)
Gene ID: Rep_634_c_3_37
Type: TC
Location: 53034 - 56159 (-)
Type: TC
Location: 53034 - 56159 (-)
Gene ID: Rep_634_c_3_38
Type: pfam
Location: 56685 - 57140 (-)
Type: pfam
Location: 56685 - 57140 (-)
Gene ID: Rep_634_c_3_39
Type: TC
Location: 57163 - 59010 (-)
Type: TC
Location: 57163 - 59010 (-)
Gene ID: Rep_634_c_3_40
Type: pfam
Location: 59007 - 59615 (-)
Type: pfam
Location: 59007 - 59615 (-)
Gene ID: Rep_634_c_3_41
Type: TC
Location: 59622 - 60944 (-)
Type: TC
Location: 59622 - 60944 (-)
Gene ID: Rep_634_c_3_42
Type: TC
Location: 60955 - 62709 (-)
Type: TC
Location: 60955 - 62709 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900760675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.