Genome Details
Selected Rep_genome_ID: Rep_426
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma intestinavium
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A19.bin_2 | 2,695,543 | 99.62% | 0% | China(Inner Mongolia) | Asia | IMGG |
| HRGMv2_0228 | 2,527,666 | 99.62% | 0% | United Kingdom | Europe | HRGM |
| MGYG000000653 | 2,583,563 | 99.62% | 0% | Germany | Europe | UHGG |
| Rep_426 | 2,589,683 | 99.6226% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_426_CGC34 | CGCFAM_00137 | Yes | 5 | 1 | |
| Rep_426_CGC1 | CGCFAM_00188 | Yes | 4 | 2 | |
| Rep_426_CGC27 | CGCFAM_00266 | Yes | 3 | 1 | |
| Rep_426_CGC18 | CGCFAM_01986 | Yes | 7 | 3 | |
| Rep_426_CGC17 | CGCFAM_02232 | Yes | 3 | 1 | |
| Rep_426_CGC5 | CGCFAM_02872 | Yes | 18 | 6 | |
| Rep_426_CGC21 | CGCFAM_02942 | Yes | 29 | 14 | |
| Rep_426_CGC10 | CGCFAM_03433 | Yes | 9 | 3 | |
| Rep_426_CGC35 | CGCFAM_03991 | Yes | 5 | 3 | |
| Rep_426_CGC20 | CGCFAM_03992 | Yes | 10 | 1 | |
| Rep_426_CGC31 | CGCFAM_03994 | Yes | 9 | 6 | |
| Rep_426_CGC8 | CGCFAM_04611 | Yes | 10 | 5 | |
| Rep_426_CGC28 | CGCFAM_04809 | Yes | 4 | 1 | |
| Rep_426_CGC26 | CGCFAM_05977 | Yes | 7 | 2 | |
| Rep_426_CGC33 | CGCFAM_05978 | Yes | 7 | 2 | |
| Rep_426_CGC19 | CGCFAM_05980 | Yes | 11 | 3 | |
| Rep_426_CGC36 | CGCFAM_05981 | Yes | 13 | 1 | |
| Rep_426_CGC6 | CGCFAM_09606 | Yes | 10 | 3 | |
| Rep_426_CGC13 | CGCFAM_09607 | Yes | 4 | 1 | |
| Rep_426_CGC7 | CGCFAM_09608 | Yes | 4 | 1 | |
| Rep_426_CGC4 | CGCFAM_11249 | Yes | 5 | 2 |
Top CAZyme Families