Cluster: Rep_426_CGC5
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_426
- CGC Family ID: CGCFAM_02872
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_426_c_0 | Rep_426_c_0_257 | 297067 | 298386 | - | 2.A.6.2.30 |
| TC | Rep_426_c_0 | Rep_426_c_0_258 | 298383 | 301421 | - | 2.A.6.2.33 |
| TC | Rep_426_c_0 | Rep_426_c_0_259 | 301439 | 302512 | - | 2.A.6.2.28 |
| TF | Rep_426_c_0 | Rep_426_c_0_260 | 302874 | 303770 | + | HTH_AraC |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_261 | 304123 | 305190 | - | GH43_19 |
| sulfatase | Rep_426_c_0 | Rep_426_c_0_262 | 305196 | 305846 | - | S1_14 |
| pfam | Rep_426_c_0 | Rep_426_c_0_263 | 305871 | 306131 | - | Acetyltransf_1 | Acetyltransf_CG |
| TC | Rep_426_c_0 | Rep_426_c_0_264 | 306154 | 307437 | - | 2.A.40.7.6 |
| pfam | Rep_426_c_0 | Rep_426_c_0_265 | 307510 | 307971 | - | SPOR |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_266 | 308181 | 311054 | + | GH31_4 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_267 | 311068 | 313284 | + | GH3 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_268 | 313892 | 316951 | - | PL11_1 |
| pfam | Rep_426_c_0 | Rep_426_c_0_269 | 317083 | 317868 | - | Laminin_G_2 | Toxin_R_bind_N | Laminin_G_3 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_270 | 317841 | 320204 | - | PL11_1 |
| pfam | Rep_426_c_0 | Rep_426_c_0_271 | 320392 | 320820 | + | RuvX |
| pfam | Rep_426_c_0 | Rep_426_c_0_272 | 320817 | 321380 | + | Pep_deformylase |
| TC | Rep_426_c_0 | Rep_426_c_0_273 | 321411 | 323096 | + | 3.A.1.120.6 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_274 | 323264 | 326320 | + | PL11_1 |
Gene ID: Rep_426_c_0_257
Type: TC
Location: 297067 - 298386 (-)
Type: TC
Location: 297067 - 298386 (-)
Gene ID: Rep_426_c_0_258
Type: TC
Location: 298383 - 301421 (-)
Type: TC
Location: 298383 - 301421 (-)
Gene ID: Rep_426_c_0_259
Type: TC
Location: 301439 - 302512 (-)
Type: TC
Location: 301439 - 302512 (-)
Gene ID: Rep_426_c_0_260
Type: TF
Location: 302874 - 303770 (+)
Type: TF
Location: 302874 - 303770 (+)
Gene ID: Rep_426_c_0_261
Type: CAZyme
Location: 304123 - 305190 (-)
Type: CAZyme
Location: 304123 - 305190 (-)
Gene ID: Rep_426_c_0_262
Type: sulfatase
Location: 305196 - 305846 (-)
Type: sulfatase
Location: 305196 - 305846 (-)
Gene ID: Rep_426_c_0_263
Type: pfam
Location: 305871 - 306131 (-)
Type: pfam
Location: 305871 - 306131 (-)
Gene ID: Rep_426_c_0_264
Type: TC
Location: 306154 - 307437 (-)
Type: TC
Location: 306154 - 307437 (-)
Gene ID: Rep_426_c_0_265
Type: pfam
Location: 307510 - 307971 (-)
Type: pfam
Location: 307510 - 307971 (-)
Gene ID: Rep_426_c_0_266
Type: CAZyme
Location: 308181 - 311054 (+)
Type: CAZyme
Location: 308181 - 311054 (+)
Gene ID: Rep_426_c_0_267
Type: CAZyme
Location: 311068 - 313284 (+)
Type: CAZyme
Location: 311068 - 313284 (+)
Gene ID: Rep_426_c_0_268
Type: CAZyme
Location: 313892 - 316951 (-)
Type: CAZyme
Location: 313892 - 316951 (-)
Gene ID: Rep_426_c_0_269
Type: pfam
Location: 317083 - 317868 (-)
Type: pfam
Location: 317083 - 317868 (-)
Gene ID: Rep_426_c_0_270
Type: CAZyme
Location: 317841 - 320204 (-)
Type: CAZyme
Location: 317841 - 320204 (-)
Gene ID: Rep_426_c_0_271
Type: pfam
Location: 320392 - 320820 (+)
Type: pfam
Location: 320392 - 320820 (+)
Gene ID: Rep_426_c_0_272
Type: pfam
Location: 320817 - 321380 (+)
Type: pfam
Location: 320817 - 321380 (+)
Gene ID: Rep_426_c_0_273
Type: TC
Location: 321411 - 323096 (+)
Type: TC
Location: 321411 - 323096 (+)
Gene ID: Rep_426_c_0_274
Type: CAZyme
Location: 323264 - 326320 (+)
Type: CAZyme
Location: 323264 - 326320 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_426_c_0_259 | vegetarian > vegan | 2.28026 | 0.00160 |
| Rep_426_c_0_260 | vegetarian > vegan | 1.05422 | 0.00160 |
| Rep_426_c_0_261 | vegetarian > vegan | 1.77547 | 0.00160 |
| Rep_426_c_0_262 | vegetarian > vegan | 1.17015 | 0.00160 |
| Rep_426_c_0_263 | vegetarian > vegan | 1.76363 | 0.00160 |
| Rep_426_c_0_265 | vegetarian > vegan | 3.30462 | 0.00160 |
| Rep_426_c_0_268 | vegetarian > vegan | 1.49695 | 0.00160 |
| Rep_426_c_0_269 | vegetarian > vegan | 1.46214 | 0.00160 |
| Rep_426_c_0_270 | vegetarian > vegan | 1.51332 | 0.00160 |
| Rep_426_c_0_271 | vegetarian > vegan | 1.55829 | 0.00160 |
| Rep_426_c_0_272 | vegetarian > vegan | 1.15519 | 0.00160 |
| Rep_426_c_0_274 | vegetarian > vegan | 1.40320 | 0.00160 |