Cluster: Rep_426_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_426
- CGC Family ID: CGCFAM_05980
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_426_c_0 | Rep_426_c_0_1085 | 1300299 | 1300667 | + | 2.A.7.34.3 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1086 | 1300768 | 1302939 | + | CBM77 | PL1 |
| TF | Rep_426_c_0 | Rep_426_c_0_1087 | 1303126 | 1307403 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1088 | 1307587 | 1309740 | + | PL1_2 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1089 | 1309758 | 1313540 | + | CE8 |
| TC | Rep_426_c_0 | Rep_426_c_0_1090 | 1313636 | 1315108 | - | 2.A.21.9.1 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1091 | 1315126 | 1316259 | - | KdpD |
| NULL(UNKNOWN) | Rep_426_c_0 | Rep_426_c_0_1092 | 1316269 | 1317006 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_426_c_0 | Rep_426_c_0_1093 | 1317076 | 1317639 | - | 3.A.3.7.2 |
| TC | Rep_426_c_0 | Rep_426_c_0_1094 | 1317659 | 1319692 | - | 3.A.3.7.2 |
| TC | Rep_426_c_0 | Rep_426_c_0_1095 | 1319727 | 1321433 | - | 3.A.3.7.2 |
Gene ID: Rep_426_c_0_1085
Type: TC
Location: 1300299 - 1300667 (+)
Type: TC
Location: 1300299 - 1300667 (+)
Gene ID: Rep_426_c_0_1086
Type: CAZyme
Location: 1300768 - 1302939 (+)
Type: CAZyme
Location: 1300768 - 1302939 (+)
Gene ID: Rep_426_c_0_1087
Type: TF
Location: 1303126 - 1307403 (+)
Type: TF
Location: 1303126 - 1307403 (+)
Gene ID: Rep_426_c_0_1088
Type: CAZyme
Location: 1307587 - 1309740 (+)
Type: CAZyme
Location: 1307587 - 1309740 (+)
Gene ID: Rep_426_c_0_1089
Type: CAZyme
Location: 1309758 - 1313540 (+)
Type: CAZyme
Location: 1309758 - 1313540 (+)
Gene ID: Rep_426_c_0_1090
Type: TC
Location: 1313636 - 1315108 (-)
Type: TC
Location: 1313636 - 1315108 (-)
Gene ID: Rep_426_c_0_1091
Type: pfam
Location: 1315126 - 1316259 (-)
Type: pfam
Location: 1315126 - 1316259 (-)
Gene ID: Rep_426_c_0_1092
Type:
Location: 1316269 - 1317006 (-)
Type:
Location: 1316269 - 1317006 (-)
Gene ID: Rep_426_c_0_1093
Type: TC
Location: 1317076 - 1317639 (-)
Type: TC
Location: 1317076 - 1317639 (-)
Gene ID: Rep_426_c_0_1094
Type: TC
Location: 1317659 - 1319692 (-)
Type: TC
Location: 1317659 - 1319692 (-)
Gene ID: Rep_426_c_0_1095
Type: TC
Location: 1319727 - 1321433 (-)
Type: TC
Location: 1319727 - 1321433 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_426_c_0_1085 | vegetarian > vegan | 3.11338 | 0.00160 |
| Rep_426_c_0_1086 | vegetarian > vegan | 2.62462 | 0.00160 |
| Rep_426_c_0_1087 | vegetarian > vegan | 2.50349 | 0.00160 |
| Rep_426_c_0_1088 | vegetarian > vegan | 1.57975 | 0.00160 |
| Rep_426_c_0_1089 | vegetarian > vegan | 1.71106 | 0.00160 |
| Rep_426_c_0_1091 | vegetarian > vegan | 1.16112 | 0.00160 |
| Rep_426_c_0_1092 | vegetarian > vegan | 1.01319 | 0.00160 |
| Rep_426_c_0_1093 | vegetarian > omnivore | 2.06876 | 0.00313 |
| Rep_426_c_0_1093 | vegetarian > vegan | 1.86498 | 0.00160 |
| Rep_426_c_0_1095 | vegan > omnivore | 1.00528 | 0.02772 |