Cluster: Rep_426_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_426
- CGC Family ID: CGCFAM_03992
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_426_c_0 | Rep_426_c_0_1110 | 1337989 | 1338453 | + | 8.A.58.2.7 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1111 | 1338457 | 1338834 | + | DUF2752 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1112 | 1338852 | 1339781 | - | PAP2_3 |
| TC | Rep_426_c_0 | Rep_426_c_0_1113 | 1339789 | 1340445 | - | 4.F.1.3.2 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1114 | 1340460 | 1340927 | - | GtrA_DPMS_TM |
| pfam | Rep_426_c_0 | Rep_426_c_0_1115 | 1340937 | 1341416 | - | PgpA |
| TC | Rep_426_c_0 | Rep_426_c_0_1116 | 1341585 | 1342880 | - | 2.A.35.1.5 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1117 | 1342891 | 1343889 | - | 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1118 | 1344060 | 1345643 | + | CE8 |
| TC | Rep_426_c_0 | Rep_426_c_0_1119 | 1345670 | 1347187 | - | 2.A.3.7.1 |
Gene ID: Rep_426_c_0_1110
Type: TC
Location: 1337989 - 1338453 (+)
Type: TC
Location: 1337989 - 1338453 (+)
Gene ID: Rep_426_c_0_1111
Type: pfam
Location: 1338457 - 1338834 (+)
Type: pfam
Location: 1338457 - 1338834 (+)
Gene ID: Rep_426_c_0_1112
Type: pfam
Location: 1338852 - 1339781 (-)
Type: pfam
Location: 1338852 - 1339781 (-)
Gene ID: Rep_426_c_0_1113
Type: TC
Location: 1339789 - 1340445 (-)
Type: TC
Location: 1339789 - 1340445 (-)
Gene ID: Rep_426_c_0_1114
Type: pfam
Location: 1340460 - 1340927 (-)
Type: pfam
Location: 1340460 - 1340927 (-)
Gene ID: Rep_426_c_0_1115
Type: pfam
Location: 1340937 - 1341416 (-)
Type: pfam
Location: 1340937 - 1341416 (-)
Gene ID: Rep_426_c_0_1116
Type: TC
Location: 1341585 - 1342880 (-)
Type: TC
Location: 1341585 - 1342880 (-)
Gene ID: Rep_426_c_0_1117
Type: pfam
Location: 1342891 - 1343889 (-)
Type: pfam
Location: 1342891 - 1343889 (-)
Gene ID: Rep_426_c_0_1118
Type: CAZyme
Location: 1344060 - 1345643 (+)
Type: CAZyme
Location: 1344060 - 1345643 (+)
Gene ID: Rep_426_c_0_1119
Type: TC
Location: 1345670 - 1347187 (-)
Type: TC
Location: 1345670 - 1347187 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_426_c_0_1110 | vegetarian > vegan | 1.03635 | 0.00160 |
| Rep_426_c_0_1111 | vegetarian > vegan | 2.42794 | 0.00160 |
| Rep_426_c_0_1113 | vegetarian > vegan | 1.24430 | 0.00160 |
| Rep_426_c_0_1114 | vegetarian > vegan | 2.76776 | 0.00160 |
| Rep_426_c_0_1115 | vegetarian > vegan | 2.29502 | 0.00160 |
| Rep_426_c_0_1116 | vegetarian > vegan | 2.36880 | 0.00160 |
| Rep_426_c_0_1118 | vegetarian > vegan | 2.20432 | 0.00160 |
| Rep_426_c_0_1119 | vegan > omnivore | 1.36414 | 0.01831 |