Cluster: Rep_426_CGC21
🧬 Cluster Details
- Gene Count: 29
- CAZyme Count: 14
- Substrate:
- Genome ID: Rep_426
- CGC Family ID: CGCFAM_02942
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_426_c_0 | Rep_426_c_0_1202 | 1422286 | 1425417 | - | 1.B.14.6.2 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1203 | 1425438 | 1427243 | - | Fasciclin |
| pfam | Rep_426_c_0 | Rep_426_c_0_1204 | 1427249 | 1428904 | - | Fasciclin | Fasciclin |
| TC | Rep_426_c_0 | Rep_426_c_0_1205 | 1428924 | 1430462 | - | 8.A.46.1.4 |
| TC | Rep_426_c_0 | Rep_426_c_0_1206 | 1430475 | 1433774 | - | 1.B.14.6.1 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1207 | 1433800 | 1436250 | - | Fasciclin |
| NULL(UNKNOWN) | Rep_426_c_0 | Rep_426_c_0_1208 | 1436299 | 1438446 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1209 | 1438829 | 1440268 | - | GH28 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1210 | 1440341 | 1441654 | - | GH105 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1211 | 1441681 | 1442490 | - | Aldolase_II |
| TC | Rep_426_c_0 | Rep_426_c_0_1212 | 1442524 | 1443561 | - | 2.A.7.6.1 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1213 | 1443639 | 1444889 | - | RhaA |
| pfam | Rep_426_c_0 | Rep_426_c_0_1214 | 1444919 | 1446400 | - | FGGY_N | FGGY_C |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1215 | 1446616 | 1449426 | - | GH106 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1216 | 1449439 | 1452321 | - | GH2 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1217 | 1452498 | 1453295 | - | CE12 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1218 | 1453359 | 1456232 | - | PL1_2 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1219 | 1457261 | 1459540 | - | CBM89 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1220 | 1459713 | 1460912 | - | GH105 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1221 | 1460936 | 1462468 | - | CE20 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1222 | 1462879 | 1464411 | - | GH51_1 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1223 | 1464430 | 1466379 | - | GH51_2 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1224 | 1466416 | 1467420 | - | GH43_18 |
| pfam | Rep_426_c_0 | Rep_426_c_0_1225 | 1468009 | 1468779 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1226 | 1468796 | 1471216 | - | GH2 |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1227 | 1471238 | 1473769 | - | GH95 |
| STP | Rep_426_c_0 | Rep_426_c_0_1228 | 1473829 | 1474548 | + | Pribosyltran |
| TC | Rep_426_c_0 | Rep_426_c_0_1229 | 1475095 | 1476492 | - | 5.B.3.1.1 |
| TC | Rep_426_c_0 | Rep_426_c_0_1230 | 1476527 | 1477300 | - | 9.B.14.3.3 |
Gene ID: Rep_426_c_0_1202
Type: TC
Location: 1422286 - 1425417 (-)
Type: TC
Location: 1422286 - 1425417 (-)
Gene ID: Rep_426_c_0_1203
Type: pfam
Location: 1425438 - 1427243 (-)
Type: pfam
Location: 1425438 - 1427243 (-)
Gene ID: Rep_426_c_0_1204
Type: pfam
Location: 1427249 - 1428904 (-)
Type: pfam
Location: 1427249 - 1428904 (-)
Gene ID: Rep_426_c_0_1205
Type: TC
Location: 1428924 - 1430462 (-)
Type: TC
Location: 1428924 - 1430462 (-)
Gene ID: Rep_426_c_0_1206
Type: TC
Location: 1430475 - 1433774 (-)
Type: TC
Location: 1430475 - 1433774 (-)
Gene ID: Rep_426_c_0_1207
Type: pfam
Location: 1433800 - 1436250 (-)
Type: pfam
Location: 1433800 - 1436250 (-)
Gene ID: Rep_426_c_0_1208
Type:
Location: 1436299 - 1438446 (-)
Type:
Location: 1436299 - 1438446 (-)
Gene ID: Rep_426_c_0_1209
Type: CAZyme
Location: 1438829 - 1440268 (-)
Type: CAZyme
Location: 1438829 - 1440268 (-)
Gene ID: Rep_426_c_0_1210
Type: CAZyme
Location: 1440341 - 1441654 (-)
Type: CAZyme
Location: 1440341 - 1441654 (-)
Gene ID: Rep_426_c_0_1211
Type: pfam
Location: 1441681 - 1442490 (-)
Type: pfam
Location: 1441681 - 1442490 (-)
Gene ID: Rep_426_c_0_1212
Type: TC
Location: 1442524 - 1443561 (-)
Type: TC
Location: 1442524 - 1443561 (-)
Gene ID: Rep_426_c_0_1213
Type: pfam
Location: 1443639 - 1444889 (-)
Type: pfam
Location: 1443639 - 1444889 (-)
Gene ID: Rep_426_c_0_1214
Type: pfam
Location: 1444919 - 1446400 (-)
Type: pfam
Location: 1444919 - 1446400 (-)
Gene ID: Rep_426_c_0_1215
Type: CAZyme
Location: 1446616 - 1449426 (-)
Type: CAZyme
Location: 1446616 - 1449426 (-)
Gene ID: Rep_426_c_0_1216
Type: CAZyme
Location: 1449439 - 1452321 (-)
Type: CAZyme
Location: 1449439 - 1452321 (-)
Gene ID: Rep_426_c_0_1217
Type: CAZyme
Location: 1452498 - 1453295 (-)
Type: CAZyme
Location: 1452498 - 1453295 (-)
Gene ID: Rep_426_c_0_1218
Type: CAZyme
Location: 1453359 - 1456232 (-)
Type: CAZyme
Location: 1453359 - 1456232 (-)
Gene ID: Rep_426_c_0_1219
Type: CAZyme
Location: 1457261 - 1459540 (-)
Type: CAZyme
Location: 1457261 - 1459540 (-)
Gene ID: Rep_426_c_0_1220
Type: CAZyme
Location: 1459713 - 1460912 (-)
Type: CAZyme
Location: 1459713 - 1460912 (-)
Gene ID: Rep_426_c_0_1221
Type: CAZyme
Location: 1460936 - 1462468 (-)
Type: CAZyme
Location: 1460936 - 1462468 (-)
Gene ID: Rep_426_c_0_1222
Type: CAZyme
Location: 1462879 - 1464411 (-)
Type: CAZyme
Location: 1462879 - 1464411 (-)
Gene ID: Rep_426_c_0_1223
Type: CAZyme
Location: 1464430 - 1466379 (-)
Type: CAZyme
Location: 1464430 - 1466379 (-)
Gene ID: Rep_426_c_0_1224
Type: CAZyme
Location: 1466416 - 1467420 (-)
Type: CAZyme
Location: 1466416 - 1467420 (-)
Gene ID: Rep_426_c_0_1225
Type: pfam
Location: 1468009 - 1468779 (-)
Type: pfam
Location: 1468009 - 1468779 (-)
Gene ID: Rep_426_c_0_1226
Type: CAZyme
Location: 1468796 - 1471216 (-)
Type: CAZyme
Location: 1468796 - 1471216 (-)
Gene ID: Rep_426_c_0_1227
Type: CAZyme
Location: 1471238 - 1473769 (-)
Type: CAZyme
Location: 1471238 - 1473769 (-)
Gene ID: Rep_426_c_0_1228
Type: STP
Location: 1473829 - 1474548 (+)
Type: STP
Location: 1473829 - 1474548 (+)
Gene ID: Rep_426_c_0_1229
Type: TC
Location: 1475095 - 1476492 (-)
Type: TC
Location: 1475095 - 1476492 (-)
Gene ID: Rep_426_c_0_1230
Type: TC
Location: 1476527 - 1477300 (-)
Type: TC
Location: 1476527 - 1477300 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_426_c_0_1202 | vegetarian > vegan | 1.62837 | 0.00160 |
| Rep_426_c_0_1203 | vegetarian > vegan | 2.84901 | 0.00160 |
| Rep_426_c_0_1204 | vegetarian > vegan | 2.06686 | 0.00160 |
| Rep_426_c_0_1205 | vegetarian > vegan | 1.53215 | 0.00160 |
| Rep_426_c_0_1206 | vegetarian > vegan | 1.29664 | 0.00160 |
| Rep_426_c_0_1207 | vegetarian > vegan | 1.86395 | 0.00160 |
| Rep_426_c_0_1209 | vegetarian > vegan | 1.80771 | 0.00160 |
| Rep_426_c_0_1210 | vegetarian > vegan | 1.24334 | 0.00160 |
| Rep_426_c_0_1212 | vegetarian > omnivore | 1.32067 | 0.03367 |
| Rep_426_c_0_1216 | vegetarian > vegan | 1.72591 | 0.00160 |
| Rep_426_c_0_1217 | vegetarian > vegan | 2.79106 | 0.00160 |
| Rep_426_c_0_1218 | vegetarian > vegan | 2.68300 | 0.00160 |
| Rep_426_c_0_1219 | vegetarian > vegan | 2.11074 | 0.00160 |
| Rep_426_c_0_1220 | vegetarian > vegan | 4.13911 | 0.00160 |
| Rep_426_c_0_1221 | vegetarian > vegan | 3.88563 | 0.00160 |
| Rep_426_c_0_1223 | vegetarian > vegan | 1.48726 | 0.00160 |
| Rep_426_c_0_1224 | vegetarian > vegan | 2.20590 | 0.00160 |
| Rep_426_c_0_1225 | vegetarian > vegan | 2.15513 | 0.00160 |
| Rep_426_c_0_1226 | vegetarian > vegan | 2.10841 | 0.00160 |
| Rep_426_c_0_1227 | vegetarian > vegan | 1.58045 | 0.00160 |
| Rep_426_c_0_1228 | vegetarian > vegan | 1.89628 | 0.00160 |
| Rep_426_c_0_1229 | vegetarian > vegan | 1.33363 | 0.00160 |
| Rep_426_c_0_1230 | vegetarian > vegan | 2.17554 | 0.00160 |