Cluster: Rep_426_CGC33
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_426
- CGC Family ID: CGCFAM_05978
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_426_c_0 | Rep_426_c_0_1878 | 2215025 | 2216632 | - | 3.A.1.15.3 |
| peptidase | Rep_426_c_0 | Rep_426_c_0_1879 | 2216660 | 2217808 | - | S12.UPW |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1880 | 2217980 | 2220568 | - | GH3 |
| TF | Rep_426_c_0 | Rep_426_c_0_1881 | 2221023 | 2225267 | + | HTH_AraC |
| CAZyme | Rep_426_c_0 | Rep_426_c_0_1882 | 2225684 | 2227783 | + | PL1_2 |
| NULL(UNKNOWN) | Rep_426_c_0 | Rep_426_c_0_1883 | 2227934 | 2230351 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_426_c_0 | Rep_426_c_0_1884 | 2230348 | 2233620 | + | 1.B.14.6.1 |
Gene ID: Rep_426_c_0_1878
Type: TC
Location: 2215025 - 2216632 (-)
Type: TC
Location: 2215025 - 2216632 (-)
Gene ID: Rep_426_c_0_1879
Type: peptidase
Location: 2216660 - 2217808 (-)
Type: peptidase
Location: 2216660 - 2217808 (-)
Gene ID: Rep_426_c_0_1880
Type: CAZyme
Location: 2217980 - 2220568 (-)
Type: CAZyme
Location: 2217980 - 2220568 (-)
Gene ID: Rep_426_c_0_1881
Type: TF
Location: 2221023 - 2225267 (+)
Type: TF
Location: 2221023 - 2225267 (+)
Gene ID: Rep_426_c_0_1882
Type: CAZyme
Location: 2225684 - 2227783 (+)
Type: CAZyme
Location: 2225684 - 2227783 (+)
Gene ID: Rep_426_c_0_1883
Type:
Location: 2227934 - 2230351 (+)
Type:
Location: 2227934 - 2230351 (+)
Gene ID: Rep_426_c_0_1884
Type: TC
Location: 2230348 - 2233620 (+)
Type: TC
Location: 2230348 - 2233620 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_426_c_0_1878 | vegetarian > vegan | 1.66859 | 0.00160 |
| Rep_426_c_0_1879 | vegetarian > vegan | 1.10304 | 0.00160 |
| Rep_426_c_0_1881 | vegetarian > vegan | 1.32082 | 0.00160 |
| Rep_426_c_0_1882 | vegetarian > vegan | 2.15052 | 0.00160 |
| Rep_426_c_0_1883 | vegetarian > vegan | 1.63793 | 0.00160 |
| Rep_426_c_0_1884 | vegetarian > vegan | 1.95701 | 0.00160 |