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Cluster: Rep_426_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_426_c_0 Rep_426_c_0_616 744782 746764 - 2.A.67.4.2
pfam Rep_426_c_0 Rep_426_c_0_617 746902 747567 + DUF2461
NULL(UNKNOWN) Rep_426_c_0 Rep_426_c_0_618 747540 747671 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_426_c_0 Rep_426_c_0_619 747673 749214 + GH28
CAZyme Rep_426_c_0 Rep_426_c_0_620 749448 751709 + GT20
CAZyme Rep_426_c_0 Rep_426_c_0_621 751710 753500 + GH15
sulfatase Rep_426_c_0 Rep_426_c_0_622 754088 755599 + S1_37
pfam Rep_426_c_0 Rep_426_c_0_623 755612 756127 + Biotin_lipoyl
TC Rep_426_c_0 Rep_426_c_0_624 756133 757665 + 3.B.1.1.2
Gene ID: Rep_426_c_0_616
Type: TC
Location: 744782 - 746764 (-)
Gene ID: Rep_426_c_0_617
Type: pfam
Location: 746902 - 747567 (+)
Gene ID: Rep_426_c_0_618
Type:
Location: 747540 - 747671 (-)
Gene ID: Rep_426_c_0_619
Type: CAZyme
Location: 747673 - 749214 (+)
Gene ID: Rep_426_c_0_620
Type: CAZyme
Location: 749448 - 751709 (+)
Gene ID: Rep_426_c_0_621
Type: CAZyme
Location: 751710 - 753500 (+)
Gene ID: Rep_426_c_0_622
Type: sulfatase
Location: 754088 - 755599 (+)
Gene ID: Rep_426_c_0_623
Type: pfam
Location: 755612 - 756127 (+)
Gene ID: Rep_426_c_0_624
Type: TC
Location: 756133 - 757665 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_426_c_0_619 vegetarian > vegan 1.91697 0.00160

🧭 Explore Read Mapping of CGC

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