Genome Details
Selected Rep_genome_ID: Rep_3457
Total Genomes Found: 22
Total Genomes Found: 22
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C112.bin_3 | 2,943,009 | 98.99% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR013808 | 2,485,126 | 98.99% | 0% | China | Asia | CGMR |
| GCA_021616065.1_ASM2161606v1_genomic | 3,285,104 | 98.99% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021619575.1_ASM2161957v1_genomic | 2,461,695 | 98.99% | 0.98% | NA | Africa | H3AfricaPhase1 |
| GCA_021621445.1_ASM2162144v1_genomic | 2,874,078 | 97.32% | 1.74% | NA | Africa | H3AfricaPhase1 |
| GCA_021622625.1_ASM2162262v1_genomic | 2,357,201 | 96.31% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021625865.1_ASM2162586v1_genomic | 2,560,911 | 98.99% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021631935.1_ASM2163193v1_genomic | 2,321,592 | 94.03% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021635385.1_ASM2163538v1_genomic | 2,359,833 | 96.34% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021636235.1_ASM2163623v1_genomic | 2,657,814 | 98.99% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021638505.1_ASM2163850v1_genomic | 2,817,875 | 98.32% | 0% | NA | Africa | H3AfricaPhase1 |
| GCA_021641555.1_ASM2164155v1_genomic | 2,579,965 | 98.32% | 0% | NA | Africa | H3AfricaPhase1 |
| GH051_126_sub | 2,972,756 | 98.99% | 0% | NA | Africa | H3AfricaPhase2 |
| GH163_maxbin.011 | 2,754,833 | 99.66% | 0% | NA | Africa | H3AfricaPhase2 |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_J_1_RAJ1015YZ.79 | 2,746,266 | 98.99% | 0% | NA | Africa | Hadza |
| Rep_3457 | 3,250,927 | 98.9933% | 0% | NA | NA | WIS |
| SPMP102_bin.125 | 2,518,556 | 94.74% | 0% | Singapore | Asia | SPMP |
| SPMP26_bin.37 | 2,439,672 | 91.55% | 0% | Singapore | Asia | SPMP |
| SPMP31_bin.133 | 2,550,924 | 94.63% | 0% | Singapore | Asia | SPMP |
| SPMP49_bin.63 | 2,641,509 | 94.46% | 0% | Singapore | Asia | SPMP |
| SPMP67_bin.47 | 2,751,449 | 95.3% | 0.67% | Singapore | Asia | SPMP |
| SPMP81_bin.41 | 2,317,620 | 92.95% | 0% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_3457_CGC9 | CGCFAM_00054 | Yes | 3 | 1 | |
| Rep_3457_CGC4 | CGCFAM_00127 | Yes | 6 | 1 | |
| Rep_3457_CGC18 | CGCFAM_00215 | Yes | 15 | 4 | alpha-glucan |
| Rep_3457_CGC22 | CGCFAM_01662 | Yes | 3 | 2 | |
| Rep_3457_CGC21 | CGCFAM_02972 | Yes | 4 | 1 | |
| Rep_3457_CGC24 | CGCFAM_03225 | Yes | 5 | 1 | |
| Rep_3457_CGC27 | CGCFAM_04065 | Yes | 9 | 1 | |
| Rep_3457_CGC30 | CGCFAM_04791 | Yes | 8 | 2 | |
| Rep_3457_CGC6 | CGCFAM_04793 | Yes | 6 | 1 | |
| Rep_3457_CGC16 | CGCFAM_10145 | Yes | 7 | 1 |
Top CAZyme Families