Cluster: Rep_3457_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3457
- CGC Family ID: CGCFAM_03225
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_1893 | 2122484 | 2124229 | + | 3.A.1.135.5 |
| TC | Rep_3457_c_0 | Rep_3457_c_0_1894 | 2124248 | 2126155 | + | 3.A.1.135.5 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_1895 | 2126323 | 2126565 | + | PhdYeFM_antitox |
| NULL(UNKNOWN) | Rep_3457_c_0 | Rep_3457_c_0_1896 | 2126562 | 2126708 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_1897 | 2126841 | 2127809 | + | GH26 |
Gene ID: Rep_3457_c_0_1893
Type: TC
Location: 2122484 - 2124229 (+)
Type: TC
Location: 2122484 - 2124229 (+)
Gene ID: Rep_3457_c_0_1894
Type: TC
Location: 2124248 - 2126155 (+)
Type: TC
Location: 2124248 - 2126155 (+)
Gene ID: Rep_3457_c_0_1895
Type: pfam
Location: 2126323 - 2126565 (+)
Type: pfam
Location: 2126323 - 2126565 (+)
Gene ID: Rep_3457_c_0_1896
Type:
Location: 2126562 - 2126708 (+)
Type:
Location: 2126562 - 2126708 (+)
Gene ID: Rep_3457_c_0_1897
Type: CAZyme
Location: 2126841 - 2127809 (+)
Type: CAZyme
Location: 2126841 - 2127809 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.