Cluster: Rep_3457_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3457
- CGC Family ID: CGCFAM_10145
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_1257 | 1420844 | 1422175 | - | 1.B.52.2.2 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_1258 | 1422351 | 1422851 | - | QueT |
| NULL(UNKNOWN) | Rep_3457_c_0 | Rep_3457_c_0_1259 | 1423487 | 1423642 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3457_c_0 | Rep_3457_c_0_1260 | 1423775 | 1425163 | + | 2.A.66.1.28 |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_1261 | 1425337 | 1428111 | + | GH3 |
| TF | Rep_3457_c_0 | Rep_3457_c_0_1262 | 1428338 | 1428745 | + | MarR |
| TC | Rep_3457_c_0 | Rep_3457_c_0_1263 | 1428771 | 1429424 | + | 2.A.115.2.8 |
Gene ID: Rep_3457_c_0_1257
Type: TC
Location: 1420844 - 1422175 (-)
Type: TC
Location: 1420844 - 1422175 (-)
Gene ID: Rep_3457_c_0_1258
Type: pfam
Location: 1422351 - 1422851 (-)
Type: pfam
Location: 1422351 - 1422851 (-)
Gene ID: Rep_3457_c_0_1259
Type:
Location: 1423487 - 1423642 (-)
Type:
Location: 1423487 - 1423642 (-)
Gene ID: Rep_3457_c_0_1260
Type: TC
Location: 1423775 - 1425163 (+)
Type: TC
Location: 1423775 - 1425163 (+)
Gene ID: Rep_3457_c_0_1261
Type: CAZyme
Location: 1425337 - 1428111 (+)
Type: CAZyme
Location: 1425337 - 1428111 (+)
Gene ID: Rep_3457_c_0_1262
Type: TF
Location: 1428338 - 1428745 (+)
Type: TF
Location: 1428338 - 1428745 (+)
Gene ID: Rep_3457_c_0_1263
Type: TC
Location: 1428771 - 1429424 (+)
Type: TC
Location: 1428771 - 1429424 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.