Cluster: Rep_3457_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3457
- CGC Family ID: CGCFAM_00127
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_205 | 273150 | 274157 | - | GH130_2 |
| STP | Rep_3457_c_0 | Rep_3457_c_0_206 | 274688 | 274900 | + | FeoA |
| STP | Rep_3457_c_0 | Rep_3457_c_0_207 | 274926 | 275147 | + | FeoA |
| TC | Rep_3457_c_0 | Rep_3457_c_0_208 | 275242 | 277764 | + | 9.A.8.1.6 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_209 | 277797 | 277991 | + | FeoB_associated |
| TC | Rep_3457_c_0 | Rep_3457_c_0_210 | 278349 | 279899 | - | 2.A.21.2.5 |
Gene ID: Rep_3457_c_0_205
Type: CAZyme
Location: 273150 - 274157 (-)
Type: CAZyme
Location: 273150 - 274157 (-)
Gene ID: Rep_3457_c_0_206
Type: STP
Location: 274688 - 274900 (+)
Type: STP
Location: 274688 - 274900 (+)
Gene ID: Rep_3457_c_0_207
Type: STP
Location: 274926 - 275147 (+)
Type: STP
Location: 274926 - 275147 (+)
Gene ID: Rep_3457_c_0_208
Type: TC
Location: 275242 - 277764 (+)
Type: TC
Location: 275242 - 277764 (+)
Gene ID: Rep_3457_c_0_209
Type: pfam
Location: 277797 - 277991 (+)
Type: pfam
Location: 277797 - 277991 (+)
Gene ID: Rep_3457_c_0_210
Type: TC
Location: 278349 - 279899 (-)
Type: TC
Location: 278349 - 279899 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3457_c_0_207 | vegetarian > omnivore | 2.07944 | 0.01878 |