Cluster: Rep_3457_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3457
- CGC Family ID: CGCFAM_04793
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3457_c_0 | Rep_3457_c_0_236 | 309906 | 311684 | + | 2.A.58.2.2 |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_237 | 311814 | 312305 | + | dCMP_cyt_deam_1 | MafB19-deam |
| pfam | Rep_3457_c_0 | Rep_3457_c_0_238 | 312413 | 313177 | + | Metallophos |
| CAZyme | Rep_3457_c_0 | Rep_3457_c_0_239 | 313246 | 314250 | - | GT4 |
| TC | Rep_3457_c_0 | Rep_3457_c_0_240 | 314334 | 315095 | - | 3.A.1.3.14 |
| TC | Rep_3457_c_0 | Rep_3457_c_0_241 | 315108 | 315815 | - | 3.A.1.3.15 |
Gene ID: Rep_3457_c_0_236
Type: TC
Location: 309906 - 311684 (+)
Type: TC
Location: 309906 - 311684 (+)
Gene ID: Rep_3457_c_0_237
Type: pfam
Location: 311814 - 312305 (+)
Type: pfam
Location: 311814 - 312305 (+)
Gene ID: Rep_3457_c_0_238
Type: pfam
Location: 312413 - 313177 (+)
Type: pfam
Location: 312413 - 313177 (+)
Gene ID: Rep_3457_c_0_239
Type: CAZyme
Location: 313246 - 314250 (-)
Type: CAZyme
Location: 313246 - 314250 (-)
Gene ID: Rep_3457_c_0_240
Type: TC
Location: 314334 - 315095 (-)
Type: TC
Location: 314334 - 315095 (-)
Gene ID: Rep_3457_c_0_241
Type: TC
Location: 315108 - 315815 (-)
Type: TC
Location: 315108 - 315815 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminiclostridium_E
Species
Ruminiclostridium_E siraeum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.