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Cluster: Rep_3457_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3457_c_0 Rep_3457_c_0_2525 2788735 2789904 - GH5_4
TF Rep_3457_c_0 Rep_3457_c_0_2526 2789916 2790710 - HTH_AraC | HTH_AraC
CAZyme Rep_3457_c_0 Rep_3457_c_0_2527 2790736 2792088 - GH43_35
pfam Rep_3457_c_0 Rep_3457_c_0_2528 2792750 2793160 + Pep_deformylase
pfam Rep_3457_c_0 Rep_3457_c_0_2529 2793244 2795853 - fn3 | fn3 | LRR_5 | LRR_5 | LRR_5 | LRR_5
TC Rep_3457_c_0 Rep_3457_c_0_2530 2796309 2797355 - 3.A.1.17.3
TC Rep_3457_c_0 Rep_3457_c_0_2531 2797357 2798100 - 3.A.1.17.13
TC Rep_3457_c_0 Rep_3457_c_0_2532 2798097 2798873 - 3.A.1.17.8
Gene ID: Rep_3457_c_0_2525
Type: CAZyme
Location: 2788735 - 2789904 (-)
Gene ID: Rep_3457_c_0_2526
Type: TF
Location: 2789916 - 2790710 (-)
Gene ID: Rep_3457_c_0_2527
Type: CAZyme
Location: 2790736 - 2792088 (-)
Gene ID: Rep_3457_c_0_2528
Type: pfam
Location: 2792750 - 2793160 (+)
Gene ID: Rep_3457_c_0_2529
Type: pfam
Location: 2793244 - 2795853 (-)
Gene ID: Rep_3457_c_0_2530
Type: TC
Location: 2796309 - 2797355 (-)
Gene ID: Rep_3457_c_0_2531
Type: TC
Location: 2797357 - 2798100 (-)
Gene ID: Rep_3457_c_0_2532
Type: TC
Location: 2798097 - 2798873 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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