dbCAN Logo

Cluster: Rep_3457_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3457_c_0 Rep_3457_c_0_1292 1467124 1467846 - 3.A.1.3.25
TC Rep_3457_c_0 Rep_3457_c_0_1293 1467833 1468534 - 3.A.1.3.15
TC Rep_3457_c_0 Rep_3457_c_0_1294 1468614 1469390 - 3.A.1.3.27
STP Rep_3457_c_0 Rep_3457_c_0_1295 1469561 1469812 - HMA
TC Rep_3457_c_0 Rep_3457_c_0_1296 1469827 1472346 - 3.A.3.5.15
pfam Rep_3457_c_0 Rep_3457_c_0_1297 1472399 1472734 - Trns_repr_metal
TF Rep_3457_c_0 Rep_3457_c_0_1298 1473171 1474166 + LacI
CAZyme Rep_3457_c_0 Rep_3457_c_0_1299 1474185 1475702 + GH77
CAZyme Rep_3457_c_0 Rep_3457_c_0_1300 1475718 1478078 + GT35
TC Rep_3457_c_0 Rep_3457_c_0_1301 1478455 1479774 + 3.A.1.1.27
TC Rep_3457_c_0 Rep_3457_c_0_1302 1480205 1481701 + 3.A.1.1.27
TC Rep_3457_c_0 Rep_3457_c_0_1303 1481701 1482576 + 3.A.1.1.27
TF Rep_3457_c_0 Rep_3457_c_0_1304 1482618 1483649 + LacI
CAZyme Rep_3457_c_0 Rep_3457_c_0_1305 1483646 1485307 + GH13_36
CAZyme Rep_3457_c_0 Rep_3457_c_0_1306 1485322 1487226 + GH13_14
Gene ID: Rep_3457_c_0_1292
Type: TC
Location: 1467124 - 1467846 (-)
Gene ID: Rep_3457_c_0_1293
Type: TC
Location: 1467833 - 1468534 (-)
Gene ID: Rep_3457_c_0_1294
Type: TC
Location: 1468614 - 1469390 (-)
Gene ID: Rep_3457_c_0_1295
Type: STP
Location: 1469561 - 1469812 (-)
Gene ID: Rep_3457_c_0_1296
Type: TC
Location: 1469827 - 1472346 (-)
Gene ID: Rep_3457_c_0_1297
Type: pfam
Location: 1472399 - 1472734 (-)
Gene ID: Rep_3457_c_0_1298
Type: TF
Location: 1473171 - 1474166 (+)
Gene ID: Rep_3457_c_0_1299
Type: CAZyme
Location: 1474185 - 1475702 (+)
Gene ID: Rep_3457_c_0_1300
Type: CAZyme
Location: 1475718 - 1478078 (+)
Gene ID: Rep_3457_c_0_1301
Type: TC
Location: 1478455 - 1479774 (+)
Gene ID: Rep_3457_c_0_1302
Type: TC
Location: 1480205 - 1481701 (+)
Gene ID: Rep_3457_c_0_1303
Type: TC
Location: 1481701 - 1482576 (+)
Gene ID: Rep_3457_c_0_1304
Type: TF
Location: 1482618 - 1483649 (+)
Gene ID: Rep_3457_c_0_1305
Type: CAZyme
Location: 1483646 - 1485307 (+)
Gene ID: Rep_3457_c_0_1306
Type: CAZyme
Location: 1485322 - 1487226 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3457_c_0_1304 vegetarian > omnivore 1.00830 0.03956

🧭 Explore Read Mapping of CGC

← Back to Cluster List