Genome Details
Selected Rep_genome_ID: Rep_230
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900551275
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG299_105 | 3,990,258 | 98.65% | 1.52% | NA | Africa | H3AfricaPhase2 |
| CGMR043289 | 3,429,039 | 97.15% | 1.35% | China | Asia | CGMR |
| GCA_021624865.1_ASM2162486v1_genomic | 3,595,395 | 97.41% | 1.52% | NA | Africa | H3AfricaPhase1 |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_J_13_THA1070JZ.13 | 2,566,227 | 90.16% | 0.79% | NA | Africa | Hadza |
| Rep_230 | 3,154,429 | 97.6351% | 0.675676% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_230_CGC37 | CGCFAM_00034 | Yes | 11 | 5 | |
| Rep_230_CGC26 | CGCFAM_00044 | Yes | 18 | 6 | beta-mannan/xylan/beta-glucan |
| Rep_230_CGC24 | CGCFAM_00059 | Yes | 8 | 1 | |
| Rep_230_CGC4 | CGCFAM_00148 | Yes | 9 | 4 | |
| Rep_230_CGC34 | CGCFAM_00445 | Yes | 3 | 1 | |
| Rep_230_CGC18 | CGCFAM_00900 | Yes | 6 | 3 | |
| Rep_230_CGC2 | CGCFAM_00925 | Yes | 12 | 5 | beta-glucan |
| Rep_230_CGC35 | CGCFAM_01240 | Yes | 6 | 5 | beta-glucan |
| Rep_230_CGC14 | CGCFAM_01256 | Yes | 8 | 2 | |
| Rep_230_CGC27 | CGCFAM_01278 | Yes | 3 | 1 | |
| Rep_230_CGC38 | CGCFAM_01338 | Yes | 3 | 1 | |
| Rep_230_CGC10 | CGCFAM_01415 | Yes | 8 | 5 | |
| Rep_230_CGC30 | CGCFAM_01566 | Yes | 5 | 3 | |
| Rep_230_CGC1 | CGCFAM_02565 | Yes | 14 | 7 | |
| Rep_230_CGC9 | CGCFAM_02699 | Yes | 3 | 2 | |
| Rep_230_CGC15 | CGCFAM_03361 | Yes | 4 | 1 | |
| Rep_230_CGC22 | CGCFAM_04166 | Yes | 6 | 1 | |
| Rep_230_CGC12 | CGCFAM_05949 | Yes | 3 | 1 | |
| Rep_230_CGC32 | CGCFAM_05962 | Yes | 5 | 2 |
Top CAZyme Families