Cluster: Rep_230_CGC2
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate: beta-glucan
- Genome ID: Rep_230
- CGC Family ID: CGCFAM_00925
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_230_c_4 | Rep_230_c_4_27 | 34634 | 36958 | - | 1.A.23.2.1 |
| NULL(UNKNOWN) | Rep_230_c_4 | Rep_230_c_4_28 | 37171 | 38121 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_230_c_4 | Rep_230_c_4_29 | 38317 | 39630 | + | GH5_4 |
| CAZyme | Rep_230_c_4 | Rep_230_c_4_30 | 39772 | 41055 | + | GH5_7 |
| NULL(UNKNOWN) | Rep_230_c_4 | Rep_230_c_4_31 | 41133 | 41348 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_230_c_4 | Rep_230_c_4_32 | 41379 | 42401 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_230_c_4 | Rep_230_c_4_33 | 42647 | 45853 | + | 1.B.14.6.1 |
| pfam | Rep_230_c_4 | Rep_230_c_4_34 | 45916 | 47709 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_230_c_4 | Rep_230_c_4_35 | 47743 | 49383 | + | SGBP_B_XBD |
| CAZyme | Rep_230_c_4 | Rep_230_c_4_36 | 49397 | 50953 | + | GH5_4 |
| CAZyme | Rep_230_c_4 | Rep_230_c_4_37 | 51140 | 52480 | + | CE7 |
| CAZyme | Rep_230_c_4 | Rep_230_c_4_38 | 52485 | 53648 | + | GH26 |
Gene ID: Rep_230_c_4_27
Type: TC
Location: 34634 - 36958 (-)
Type: TC
Location: 34634 - 36958 (-)
Gene ID: Rep_230_c_4_28
Type:
Location: 37171 - 38121 (+)
Type:
Location: 37171 - 38121 (+)
Gene ID: Rep_230_c_4_29
Type: CAZyme
Location: 38317 - 39630 (+)
Type: CAZyme
Location: 38317 - 39630 (+)
Gene ID: Rep_230_c_4_30
Type: CAZyme
Location: 39772 - 41055 (+)
Type: CAZyme
Location: 39772 - 41055 (+)
Gene ID: Rep_230_c_4_31
Type:
Location: 41133 - 41348 (-)
Type:
Location: 41133 - 41348 (-)
Gene ID: Rep_230_c_4_32
Type:
Location: 41379 - 42401 (+)
Type:
Location: 41379 - 42401 (+)
Gene ID: Rep_230_c_4_33
Type: TC
Location: 42647 - 45853 (+)
Type: TC
Location: 42647 - 45853 (+)
Gene ID: Rep_230_c_4_34
Type: pfam
Location: 45916 - 47709 (+)
Type: pfam
Location: 45916 - 47709 (+)
Gene ID: Rep_230_c_4_35
Type: pfam
Location: 47743 - 49383 (+)
Type: pfam
Location: 47743 - 49383 (+)
Gene ID: Rep_230_c_4_36
Type: CAZyme
Location: 49397 - 50953 (+)
Type: CAZyme
Location: 49397 - 50953 (+)
Gene ID: Rep_230_c_4_37
Type: CAZyme
Location: 51140 - 52480 (+)
Type: CAZyme
Location: 51140 - 52480 (+)
Gene ID: Rep_230_c_4_38
Type: CAZyme
Location: 52485 - 53648 (+)
Type: CAZyme
Location: 52485 - 53648 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900551275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.