Cluster: Rep_230_CGC24
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_230
- CGC Family ID: CGCFAM_00059
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_230_c_139 | Rep_230_c_139_5 | 3973 | 7131 | - | 2.A.6.1.5 |
| TC | Rep_230_c_139 | Rep_230_c_139_6 | 7187 | 8389 | - | 2.A.6.1.2 |
| NULL(UNKNOWN) | Rep_230_c_139 | Rep_230_c_139_7 | 8493 | 8897 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_230_c_139 | Rep_230_c_139_8 | 9093 | 11177 | + | DsbD_TM | DsbD_N | Thioredoxin_2 | Thioredoxin_7 |
| TC | Rep_230_c_139 | Rep_230_c_139_9 | 11567 | 13165 | - | 1.B.9.4.2 |
| NULL(UNKNOWN) | Rep_230_c_139 | Rep_230_c_139_10 | 13322 | 14314 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_230_c_139 | Rep_230_c_139_11 | 14588 | 15460 | + | Ubie_methyltran | MTS | PrmA | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | Rep_230_c_139 | Rep_230_c_139_12 | 15575 | 16468 | - | GH25 |
Gene ID: Rep_230_c_139_5
Type: TC
Location: 3973 - 7131 (-)
Type: TC
Location: 3973 - 7131 (-)
Gene ID: Rep_230_c_139_6
Type: TC
Location: 7187 - 8389 (-)
Type: TC
Location: 7187 - 8389 (-)
Gene ID: Rep_230_c_139_7
Type:
Location: 8493 - 8897 (-)
Type:
Location: 8493 - 8897 (-)
Gene ID: Rep_230_c_139_8
Type: pfam
Location: 9093 - 11177 (+)
Type: pfam
Location: 9093 - 11177 (+)
Gene ID: Rep_230_c_139_9
Type: TC
Location: 11567 - 13165 (-)
Type: TC
Location: 11567 - 13165 (-)
Gene ID: Rep_230_c_139_10
Type:
Location: 13322 - 14314 (-)
Type:
Location: 13322 - 14314 (-)
Gene ID: Rep_230_c_139_11
Type: pfam
Location: 14588 - 15460 (+)
Type: pfam
Location: 14588 - 15460 (+)
Gene ID: Rep_230_c_139_12
Type: CAZyme
Location: 15575 - 16468 (-)
Type: CAZyme
Location: 15575 - 16468 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900551275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_230_c_139_5 | vegetarian > omnivore | 2.02199 | 0.02105 |
| Rep_230_c_139_6 | vegetarian > omnivore | 2.06275 | 0.02105 |
| Rep_230_c_139_7 | vegetarian > omnivore | 1.72737 | 0.02105 |