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Cluster: Rep_230_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_230_c_64 Rep_230_c_64_9 11908 13068 - GT4
CAZyme Rep_230_c_64 Rep_230_c_64_10 13070 13909 - GT2
CAZyme Rep_230_c_64 Rep_230_c_64_11 13909 14907 - GT2
CAZyme Rep_230_c_64 Rep_230_c_64_12 14904 15827 - GT8
CAZyme Rep_230_c_64 Rep_230_c_64_13 15951 16973 - GT113
pfam Rep_230_c_64 Rep_230_c_64_14 17016 17771 - Kdo
pfam Rep_230_c_64 Rep_230_c_64_15 17810 18733 - Lip_A_acyltrans
TC Rep_230_c_64 Rep_230_c_64_16 18775 20664 - 3.A.1.106.2
Gene ID: Rep_230_c_64_9
Type: CAZyme
Location: 11908 - 13068 (-)
Gene ID: Rep_230_c_64_10
Type: CAZyme
Location: 13070 - 13909 (-)
Gene ID: Rep_230_c_64_11
Type: CAZyme
Location: 13909 - 14907 (-)
Gene ID: Rep_230_c_64_12
Type: CAZyme
Location: 14904 - 15827 (-)
Gene ID: Rep_230_c_64_13
Type: CAZyme
Location: 15951 - 16973 (-)
Gene ID: Rep_230_c_64_14
Type: pfam
Location: 17016 - 17771 (-)
Gene ID: Rep_230_c_64_15
Type: pfam
Location: 17810 - 18733 (-)
Gene ID: Rep_230_c_64_16
Type: TC
Location: 18775 - 20664 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_230_c_64_9 vegetarian > omnivore 1.22613 0.02105
Rep_230_c_64_10 vegetarian > omnivore 1.34265 0.02105
Rep_230_c_64_11 vegetarian > omnivore 1.23247 0.02105
Rep_230_c_64_12 vegetarian > omnivore 1.06848 0.02105

🧭 Explore Read Mapping of CGC

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