dbCAN Logo

Cluster: Rep_230_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_230_c_13 Rep_230_c_13_5 6053 9118 + 1.B.14.6.1
TC Rep_230_c_13 Rep_230_c_13_6 9183 10745 + 8.A.46.1.6
NULL(UNKNOWN) Rep_230_c_13 Rep_230_c_13_7 10780 11697 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_230_c_13 Rep_230_c_13_8 11816 13021 + CE1
CAZyme Rep_230_c_13 Rep_230_c_13_9 13039 14265 + CE1
CAZyme Rep_230_c_13 Rep_230_c_13_10 14327 16672 + GH3
STP Rep_230_c_13 Rep_230_c_13_11 16812 18011 - ACT | PALP
TF Rep_230_c_13 Rep_230_c_13_12 18181 21930 + HTH_AraC
CAZyme Rep_230_c_13 Rep_230_c_13_13 22364 24325 + GH97
Gene ID: Rep_230_c_13_5
Type: TC
Location: 6053 - 9118 (+)
Gene ID: Rep_230_c_13_6
Type: TC
Location: 9183 - 10745 (+)
Gene ID: Rep_230_c_13_7
Type:
Location: 10780 - 11697 (+)
Gene ID: Rep_230_c_13_8
Type: CAZyme
Location: 11816 - 13021 (+)
Gene ID: Rep_230_c_13_9
Type: CAZyme
Location: 13039 - 14265 (+)
Gene ID: Rep_230_c_13_10
Type: CAZyme
Location: 14327 - 16672 (+)
Gene ID: Rep_230_c_13_11
Type: STP
Location: 16812 - 18011 (-)
Gene ID: Rep_230_c_13_12
Type: TF
Location: 18181 - 21930 (+)
Gene ID: Rep_230_c_13_13
Type: CAZyme
Location: 22364 - 24325 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_230_c_13_12 vegetarian > omnivore 1.24925 0.02105
Rep_230_c_13_12 vegetarian > vegan 3.92546 0.00565

🧭 Explore Read Mapping of CGC

← Back to Cluster List