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Cluster: Rep_230_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_230_c_203 Rep_230_c_203_15 23744 25669 - GH13_46
CAZyme Rep_230_c_203 Rep_230_c_203_16 25694 27646 - GH13_14
CAZyme Rep_230_c_203 Rep_230_c_203_17 27778 29913 - GH97
CAZyme Rep_230_c_203 Rep_230_c_203_18 30089 32764 - GH77
TC Rep_230_c_203 Rep_230_c_203_19 32935 34275 - 2.A.2.6.2
TF Rep_230_c_203 Rep_230_c_203_20 34297 35298 - LacI
TC Rep_230_c_203 Rep_230_c_203_21 35668 38760 + 1.B.14.6.1
TC Rep_230_c_203 Rep_230_c_203_22 38780 40405 + 8.A.46.1.1
pfam Rep_230_c_203 Rep_230_c_203_23 40426 41619 + SusE | SusF_SusE
pfam Rep_230_c_203 Rep_230_c_203_24 41668 43056 + SusF_SusE | SusF_N
CAZyme Rep_230_c_203 Rep_230_c_203_25 43139 44239 + GH53
Gene ID: Rep_230_c_203_15
Type: CAZyme
Location: 23744 - 25669 (-)
Gene ID: Rep_230_c_203_16
Type: CAZyme
Location: 25694 - 27646 (-)
Gene ID: Rep_230_c_203_17
Type: CAZyme
Location: 27778 - 29913 (-)
Gene ID: Rep_230_c_203_18
Type: CAZyme
Location: 30089 - 32764 (-)
Gene ID: Rep_230_c_203_19
Type: TC
Location: 32935 - 34275 (-)
Gene ID: Rep_230_c_203_20
Type: TF
Location: 34297 - 35298 (-)
Gene ID: Rep_230_c_203_21
Type: TC
Location: 35668 - 38760 (+)
Gene ID: Rep_230_c_203_22
Type: TC
Location: 38780 - 40405 (+)
Gene ID: Rep_230_c_203_23
Type: pfam
Location: 40426 - 41619 (+)
Gene ID: Rep_230_c_203_24
Type: pfam
Location: 41668 - 43056 (+)
Gene ID: Rep_230_c_203_25
Type: CAZyme
Location: 43139 - 44239 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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