Cluster: Rep_230_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_230
- CGC Family ID: CGCFAM_02565
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_230_c_3 | Rep_230_c_3_8 | 4895 | 7519 | + | GH105 | GH28 |
| CAZyme | Rep_230_c_3 | Rep_230_c_3_9 | 7578 | 9371 | + | PL1_2 |
| NULL(UNKNOWN) | Rep_230_c_3 | Rep_230_c_3_10 | 9452 | 10081 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_230_c_3 | Rep_230_c_3_11 | 10367 | 13558 | + | CE8 |
| TC | Rep_230_c_3 | Rep_230_c_3_12 | 13993 | 17301 | + | 1.B.14.6.1 |
| TC | Rep_230_c_3 | Rep_230_c_3_13 | 17322 | 19379 | + | 8.A.46.1.3 |
| NULL(UNKNOWN) | Rep_230_c_3 | Rep_230_c_3_14 | 19420 | 21144 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_230_c_3 | Rep_230_c_3_15 | 21315 | 22289 | + | PDDEXK_2 |
| TC | Rep_230_c_3 | Rep_230_c_3_16 | 23352 | 26627 | + | 1.B.14.6.1 |
| TC | Rep_230_c_3 | Rep_230_c_3_17 | 26652 | 28361 | + | 8.A.46.1.3 |
| CAZyme | Rep_230_c_3 | Rep_230_c_3_18 | 28605 | 30635 | + | GH28 |
| CAZyme | Rep_230_c_3 | Rep_230_c_3_19 | 30657 | 32447 | + | GH43_10 |
| CAZyme | Rep_230_c_3 | Rep_230_c_3_20 | 32561 | 33991 | - | GH57 |
| CAZyme | Rep_230_c_3 | Rep_230_c_3_21 | 34029 | 35051 | - | GT4 |
Gene ID: Rep_230_c_3_8
Type: CAZyme
Location: 4895 - 7519 (+)
Type: CAZyme
Location: 4895 - 7519 (+)
Gene ID: Rep_230_c_3_9
Type: CAZyme
Location: 7578 - 9371 (+)
Type: CAZyme
Location: 7578 - 9371 (+)
Gene ID: Rep_230_c_3_10
Type:
Location: 9452 - 10081 (-)
Type:
Location: 9452 - 10081 (-)
Gene ID: Rep_230_c_3_11
Type: CAZyme
Location: 10367 - 13558 (+)
Type: CAZyme
Location: 10367 - 13558 (+)
Gene ID: Rep_230_c_3_12
Type: TC
Location: 13993 - 17301 (+)
Type: TC
Location: 13993 - 17301 (+)
Gene ID: Rep_230_c_3_13
Type: TC
Location: 17322 - 19379 (+)
Type: TC
Location: 17322 - 19379 (+)
Gene ID: Rep_230_c_3_14
Type:
Location: 19420 - 21144 (+)
Type:
Location: 19420 - 21144 (+)
Gene ID: Rep_230_c_3_15
Type: pfam
Location: 21315 - 22289 (+)
Type: pfam
Location: 21315 - 22289 (+)
Gene ID: Rep_230_c_3_16
Type: TC
Location: 23352 - 26627 (+)
Type: TC
Location: 23352 - 26627 (+)
Gene ID: Rep_230_c_3_17
Type: TC
Location: 26652 - 28361 (+)
Type: TC
Location: 26652 - 28361 (+)
Gene ID: Rep_230_c_3_18
Type: CAZyme
Location: 28605 - 30635 (+)
Type: CAZyme
Location: 28605 - 30635 (+)
Gene ID: Rep_230_c_3_19
Type: CAZyme
Location: 30657 - 32447 (+)
Type: CAZyme
Location: 30657 - 32447 (+)
Gene ID: Rep_230_c_3_20
Type: CAZyme
Location: 32561 - 33991 (-)
Type: CAZyme
Location: 32561 - 33991 (-)
Gene ID: Rep_230_c_3_21
Type: CAZyme
Location: 34029 - 35051 (-)
Type: CAZyme
Location: 34029 - 35051 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900551275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.