Cluster: Rep_230_CGC26
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: Rep_230
- CGC Family ID: CGCFAM_00044
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_230_c_142 | Rep_230_c_142_29 | 34488 | 36842 | - | GH3 |
| pfam | Rep_230_c_142 | Rep_230_c_142_30 | 37482 | 38252 | - | Ubie_methyltran | Methyltransf_4 | Methyltransf_25 | Methyltransf_31 |
| TC | Rep_230_c_142 | Rep_230_c_142_31 | 38348 | 39058 | - | 3.A.1.124.5 |
| pfam | Rep_230_c_142 | Rep_230_c_142_32 | 39095 | 40495 | - | DUF5687 |
| CAZyme | Rep_230_c_142 | Rep_230_c_142_33 | 40759 | 41721 | - | GH43_1 |
| CAZyme | Rep_230_c_142 | Rep_230_c_142_34 | 41731 | 42855 | - | GH10 |
| TC | Rep_230_c_142 | Rep_230_c_142_35 | 42893 | 44326 | - | 2.A.2.3.2 |
| pfam | Rep_230_c_142 | Rep_230_c_142_36 | 44382 | 45587 | - | Lipase_GDSL | Lipase_GDSL_2 |
| TF | Rep_230_c_142 | Rep_230_c_142_37 | 45839 | 49759 | + | HTH_AraC |
| CAZyme | Rep_230_c_142 | Rep_230_c_142_38 | 49843 | 51849 | + | GH67 |
| CAZyme | Rep_230_c_142 | Rep_230_c_142_39 | 51842 | 53488 | + | GH35 |
| TC | Rep_230_c_142 | Rep_230_c_142_40 | 53737 | 56826 | + | 1.B.14.6.1 |
| pfam | Rep_230_c_142 | Rep_230_c_142_41 | 56839 | 58830 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_230_c_142 | Rep_230_c_142_42 | 59130 | 62309 | + | 1.B.14.6.1 |
| pfam | Rep_230_c_142 | Rep_230_c_142_43 | 62338 | 64077 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_230_c_142 | Rep_230_c_142_44 | 64120 | 65526 | + | SGBP_B_XBD |
| CAZyme | Rep_230_c_142 | Rep_230_c_142_45 | 65549 | 67963 | + | GH10 |
| TC | Rep_230_c_142 | Rep_230_c_142_46 | 68744 | 71989 | + | 1.B.14.6.2 |
Gene ID: Rep_230_c_142_29
Type: CAZyme
Location: 34488 - 36842 (-)
Type: CAZyme
Location: 34488 - 36842 (-)
Gene ID: Rep_230_c_142_30
Type: pfam
Location: 37482 - 38252 (-)
Type: pfam
Location: 37482 - 38252 (-)
Gene ID: Rep_230_c_142_31
Type: TC
Location: 38348 - 39058 (-)
Type: TC
Location: 38348 - 39058 (-)
Gene ID: Rep_230_c_142_32
Type: pfam
Location: 39095 - 40495 (-)
Type: pfam
Location: 39095 - 40495 (-)
Gene ID: Rep_230_c_142_33
Type: CAZyme
Location: 40759 - 41721 (-)
Type: CAZyme
Location: 40759 - 41721 (-)
Gene ID: Rep_230_c_142_34
Type: CAZyme
Location: 41731 - 42855 (-)
Type: CAZyme
Location: 41731 - 42855 (-)
Gene ID: Rep_230_c_142_35
Type: TC
Location: 42893 - 44326 (-)
Type: TC
Location: 42893 - 44326 (-)
Gene ID: Rep_230_c_142_36
Type: pfam
Location: 44382 - 45587 (-)
Type: pfam
Location: 44382 - 45587 (-)
Gene ID: Rep_230_c_142_37
Type: TF
Location: 45839 - 49759 (+)
Type: TF
Location: 45839 - 49759 (+)
Gene ID: Rep_230_c_142_38
Type: CAZyme
Location: 49843 - 51849 (+)
Type: CAZyme
Location: 49843 - 51849 (+)
Gene ID: Rep_230_c_142_39
Type: CAZyme
Location: 51842 - 53488 (+)
Type: CAZyme
Location: 51842 - 53488 (+)
Gene ID: Rep_230_c_142_40
Type: TC
Location: 53737 - 56826 (+)
Type: TC
Location: 53737 - 56826 (+)
Gene ID: Rep_230_c_142_41
Type: pfam
Location: 56839 - 58830 (+)
Type: pfam
Location: 56839 - 58830 (+)
Gene ID: Rep_230_c_142_42
Type: TC
Location: 59130 - 62309 (+)
Type: TC
Location: 59130 - 62309 (+)
Gene ID: Rep_230_c_142_43
Type: pfam
Location: 62338 - 64077 (+)
Type: pfam
Location: 62338 - 64077 (+)
Gene ID: Rep_230_c_142_44
Type: pfam
Location: 64120 - 65526 (+)
Type: pfam
Location: 64120 - 65526 (+)
Gene ID: Rep_230_c_142_45
Type: CAZyme
Location: 65549 - 67963 (+)
Type: CAZyme
Location: 65549 - 67963 (+)
Gene ID: Rep_230_c_142_46
Type: TC
Location: 68744 - 71989 (+)
Type: TC
Location: 68744 - 71989 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900551275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.