Genome Details
Selected Rep_genome_ID: Rep_108
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR007696 | 1,998,550 | 93.44% | 4.09% | China | Asia | CGMR |
| Rep_108 | 2,007,181 | 96.3208% | 0.628931% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_108_CGC16 | CGCFAM_00001 | Yes | 4 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_108_CGC17 | CGCFAM_00001 | Yes | 6 | 3 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_108_CGC13 | CGCFAM_00022 | Yes | 7 | 2 | |
| Rep_108_CGC10 | CGCFAM_00025 | Yes | 12 | 5 | pectin/alpha-glucan |
| Rep_108_CGC18 | CGCFAM_00265 | Yes | 3 | 1 | beta-glucan |
| Rep_108_CGC15 | CGCFAM_06313 | Yes | 5 | 1 | |
| Rep_108_CGC5 | CGCFAM_06314 | Yes | 8 | 1 | |
| Rep_108_CGC11 | CGCFAM_06396 | Yes | 9 | 3 | |
| Rep_108_CGC6 | CGCFAM_11230 | Yes | 6 | 2 |
Top CAZyme Families