Cluster: Rep_108_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_108
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_108_c_12 | Rep_108_c_12_21 | 24900 | 26594 | - | GH3 |
| pfam | Rep_108_c_12 | Rep_108_c_12_22 | 26700 | 28508 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_108_c_12 | Rep_108_c_12_23 | 28530 | 31820 | - | 1.B.14.6.1 |
| CAZyme | Rep_108_c_12 | Rep_108_c_12_24 | 31847 | 33064 | - | GH171 |
Gene ID: Rep_108_c_12_21
Type: CAZyme
Location: 24900 - 26594 (-)
Type: CAZyme
Location: 24900 - 26594 (-)
Gene ID: Rep_108_c_12_22
Type: pfam
Location: 26700 - 28508 (-)
Type: pfam
Location: 26700 - 28508 (-)
Gene ID: Rep_108_c_12_23
Type: TC
Location: 28530 - 31820 (-)
Type: TC
Location: 28530 - 31820 (-)
Gene ID: Rep_108_c_12_24
Type: CAZyme
Location: 31847 - 33064 (-)
Type: CAZyme
Location: 31847 - 33064 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.