Cluster: Rep_108_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_108
- CGC Family ID: CGCFAM_00022
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_108_c_9 | Rep_108_c_9_30 | 37459 | 38694 | + | 2.A.66.2.10 |
| CAZyme | Rep_108_c_9 | Rep_108_c_9_31 | 38785 | 39882 | + | GT4 |
| TC | Rep_108_c_9 | Rep_108_c_9_32 | 39914 | 41242 | + | 9.B.67.3.4 |
| CAZyme | Rep_108_c_9 | Rep_108_c_9_33 | 41323 | 42402 | + | GT4 |
| NULL(UNKNOWN) | Rep_108_c_9 | Rep_108_c_9_34 | 42482 | 43435 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_108_c_9 | Rep_108_c_9_35 | 43435 | 44163 | + | DUF5131 |
| TC | Rep_108_c_9 | Rep_108_c_9_36 | 44185 | 44805 | + | 9.B.18.1.2 |
Gene ID: Rep_108_c_9_30
Type: TC
Location: 37459 - 38694 (+)
Type: TC
Location: 37459 - 38694 (+)
Gene ID: Rep_108_c_9_31
Type: CAZyme
Location: 38785 - 39882 (+)
Type: CAZyme
Location: 38785 - 39882 (+)
Gene ID: Rep_108_c_9_32
Type: TC
Location: 39914 - 41242 (+)
Type: TC
Location: 39914 - 41242 (+)
Gene ID: Rep_108_c_9_33
Type: CAZyme
Location: 41323 - 42402 (+)
Type: CAZyme
Location: 41323 - 42402 (+)
Gene ID: Rep_108_c_9_34
Type:
Location: 42482 - 43435 (+)
Type:
Location: 42482 - 43435 (+)
Gene ID: Rep_108_c_9_35
Type: pfam
Location: 43435 - 44163 (+)
Type: pfam
Location: 43435 - 44163 (+)
Gene ID: Rep_108_c_9_36
Type: TC
Location: 44185 - 44805 (+)
Type: TC
Location: 44185 - 44805 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.