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Cluster: Rep_108_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_108_c_3 Rep_108_c_3_29 42609 44849 + GH92
pfam Rep_108_c_3 Rep_108_c_3_30 44853 46106 + FtsX | MacB_PCD
pfam Rep_108_c_3 Rep_108_c_3_31 46128 46610 + DMRL_synthase
TC Rep_108_c_3 Rep_108_c_3_32 46667 47197 - 2.A.51.1.6
TC Rep_108_c_3 Rep_108_c_3_33 47194 47802 - 2.A.51.1.6
pfam Rep_108_c_3 Rep_108_c_3_34 47809 48960 - Lactonase
pfam Rep_108_c_3 Rep_108_c_3_35 48977 49900 - Radical_SAM
TC Rep_108_c_3 Rep_108_c_3_36 49897 52092 - 8.A.51.1.1
Gene ID: Rep_108_c_3_29
Type: CAZyme
Location: 42609 - 44849 (+)
Gene ID: Rep_108_c_3_30
Type: pfam
Location: 44853 - 46106 (+)
Gene ID: Rep_108_c_3_31
Type: pfam
Location: 46128 - 46610 (+)
Gene ID: Rep_108_c_3_32
Type: TC
Location: 46667 - 47197 (-)
Gene ID: Rep_108_c_3_33
Type: TC
Location: 47194 - 47802 (-)
Gene ID: Rep_108_c_3_34
Type: pfam
Location: 47809 - 48960 (-)
Gene ID: Rep_108_c_3_35
Type: pfam
Location: 48977 - 49900 (-)
Gene ID: Rep_108_c_3_36
Type: TC
Location: 49897 - 52092 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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