Cluster: Rep_108_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_108
- CGC Family ID: CGCFAM_06313
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_108_c_10 | Rep_108_c_10_36 | 55191 | 55976 | - | 3.A.1.14.3 |
| TC | Rep_108_c_10 | Rep_108_c_10_37 | 55973 | 56983 | - | 3.A.1.14.5 |
| STP | Rep_108_c_10 | Rep_108_c_10_38 | 56984 | 57808 | - | Peripla_BP_2 |
| pfam | Rep_108_c_10 | Rep_108_c_10_39 | 57827 | 58501 | - | OMP_b-brl_2 |
| CAZyme | Rep_108_c_10 | Rep_108_c_10_40 | 58501 | 60231 | - | CBM50 |
Gene ID: Rep_108_c_10_36
Type: TC
Location: 55191 - 55976 (-)
Type: TC
Location: 55191 - 55976 (-)
Gene ID: Rep_108_c_10_37
Type: TC
Location: 55973 - 56983 (-)
Type: TC
Location: 55973 - 56983 (-)
Gene ID: Rep_108_c_10_38
Type: STP
Location: 56984 - 57808 (-)
Type: STP
Location: 56984 - 57808 (-)
Gene ID: Rep_108_c_10_39
Type: pfam
Location: 57827 - 58501 (-)
Type: pfam
Location: 57827 - 58501 (-)
Gene ID: Rep_108_c_10_40
Type: CAZyme
Location: 58501 - 60231 (-)
Type: CAZyme
Location: 58501 - 60231 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.