Cluster: Rep_108_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: Rep_108
- CGC Family ID: CGCFAM_00265
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_108_c_25 | Rep_108_c_25_15 | 11714 | 13144 | + | GH109 |
| pfam | Rep_108_c_25 | Rep_108_c_25_16 | 13639 | 15228 | - | SusD-like | SusD-like_2 |
| TC | Rep_108_c_25 | Rep_108_c_25_17 | 15244 | 18429 | - | 1.B.14.6.2 |
Gene ID: Rep_108_c_25_15
Type: CAZyme
Location: 11714 - 13144 (+)
Type: CAZyme
Location: 11714 - 13144 (+)
Gene ID: Rep_108_c_25_16
Type: pfam
Location: 13639 - 15228 (-)
Type: pfam
Location: 13639 - 15228 (-)
Gene ID: Rep_108_c_25_17
Type: TC
Location: 15244 - 18429 (-)
Type: TC
Location: 15244 - 18429 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.