Cluster: Rep_108_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_108
- CGC Family ID: CGCFAM_11230
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_108_c_3 | Rep_108_c_3_44 | 62934 | 64310 | + | 2.A.66.1.28 |
| TC | Rep_108_c_3 | Rep_108_c_3_45 | 64552 | 66705 | + | 8.A.51.1.1 |
| pfam | Rep_108_c_3 | Rep_108_c_3_46 | 66726 | 68015 | + | GARS_A | GARS_C | GARS_N |
| NULL(UNKNOWN) | Rep_108_c_3 | Rep_108_c_3_47 | 68039 | 68908 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_108_c_3 | Rep_108_c_3_48 | 68923 | 69885 | + | GT2 |
| CAZyme | Rep_108_c_3 | Rep_108_c_3_49 | 69877 | 71007 | - | GT19 |
Gene ID: Rep_108_c_3_44
Type: TC
Location: 62934 - 64310 (+)
Type: TC
Location: 62934 - 64310 (+)
Gene ID: Rep_108_c_3_45
Type: TC
Location: 64552 - 66705 (+)
Type: TC
Location: 64552 - 66705 (+)
Gene ID: Rep_108_c_3_46
Type: pfam
Location: 66726 - 68015 (+)
Type: pfam
Location: 66726 - 68015 (+)
Gene ID: Rep_108_c_3_47
Type:
Location: 68039 - 68908 (+)
Type:
Location: 68039 - 68908 (+)
Gene ID: Rep_108_c_3_48
Type: CAZyme
Location: 68923 - 69885 (+)
Type: CAZyme
Location: 68923 - 69885 (+)
Gene ID: Rep_108_c_3_49
Type: CAZyme
Location: 69877 - 71007 (-)
Type: CAZyme
Location: 69877 - 71007 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.