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Cluster: Rep_108_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_108_c_7 Rep_108_c_7_26 30979 31962 + GT2
pfam Rep_108_c_7 Rep_108_c_7_27 31977 33095 + SMC_N | AAA_15 | AAA_23
pfam Rep_108_c_7 Rep_108_c_7_28 33103 33429 + DciA
TC Rep_108_c_7 Rep_108_c_7_29 34091 37222 + 1.B.14.6.1
pfam Rep_108_c_7 Rep_108_c_7_30 37235 39163 + SusD_RagB | SusD-like_3
CAZyme Rep_108_c_7 Rep_108_c_7_31 39181 40488 + CBM32
CAZyme Rep_108_c_7 Rep_108_c_7_32 40571 43369 + CBM32
pfam Rep_108_c_7 Rep_108_c_7_33 43675 44610 + EamA | EamA
TC Rep_108_c_7 Rep_108_c_7_34 44670 47630 + 1.B.42.1.8
Gene ID: Rep_108_c_7_26
Type: CAZyme
Location: 30979 - 31962 (+)
Gene ID: Rep_108_c_7_27
Type: pfam
Location: 31977 - 33095 (+)
Gene ID: Rep_108_c_7_28
Type: pfam
Location: 33103 - 33429 (+)
Gene ID: Rep_108_c_7_29
Type: TC
Location: 34091 - 37222 (+)
Gene ID: Rep_108_c_7_30
Type: pfam
Location: 37235 - 39163 (+)
Gene ID: Rep_108_c_7_31
Type: CAZyme
Location: 39181 - 40488 (+)
Gene ID: Rep_108_c_7_32
Type: CAZyme
Location: 40571 - 43369 (+)
Gene ID: Rep_108_c_7_33
Type: pfam
Location: 43675 - 44610 (+)
Gene ID: Rep_108_c_7_34
Type: TC
Location: 44670 - 47630 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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